| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1881 |
|---|
| Symbol | |
|---|
| ID | 3908076 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 2146960 |
|---|
| End bp | 2149035 |
|---|
| Gene Length | 2076 bp |
|---|
| Protein Length | 691 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637883775 |
|---|
| Product | glycogen debranching protein GlgX |
|---|
| Protein accession | YP_485500 |
|---|
| Protein GI | 86749004 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1523] Type II secretory pathway, pullulanase PulA and related glycosidases |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR02100] glycogen debranching enzyme GlgX |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGCCTTA CCGCCGGAAG CTGCTCCCGT CTCGGCGCCA CCTGGGACGG CCGCGGCACC
AATTTCGCGC TGTTCTCGGC CAATGCCCAC AAGGTCGAAT TGTGCCTGTT CGACAGCCAG
GGCCGCCGCG AGCTGGAGCG GATCGAGCTG CCGGAGCGCA CCGAGGACGT TTGGCACGGC
TATCTCAACG ACGTGTCGCC CGGCCAGCTC TACGGCTACC GGGTGCACGG CCCCTACGAT
CCCGAGCGAG GCCATCGCTT CAACGCCCAC AAGCTGCTGC TCGATCCCTA TGCCAAGCGG
CTGTCCGGCC GGCTGGTGTG GAGCGATGCG CACTTCGCCT ATCGCGCCGG CAGCCCTCGC
GAGGATCTGT CGTTCGATCG CCGCGACAAC GCCCGCGGCA TGCCGAAGGC GGTGGTGGTC
GACGAGACCG GCGGCTTCTC GCGCCACGAG AGCCGGCCGA ACATTCCCTG GGAAGACACC
ATCATCTACG AAGCCCACGT CAAGGGCCTG ACGCAGCTGC GCGAAGACGT GCCGCCCGGC
CTGCGCGGCA CCTTCGGCGG GCTCGCCGCG CCGGCGATGA TCGATCATTT CAAGCGTCTC
GGCGTCACCG CGATCGAACT TCTTCCCGTC CACGCGCTTA TCGATGATCG CGTGCTGGTC
GAGAAGAAGC TGGTGAACTA CTGGGGCTAC AATACGATTT CGTTTTTCGC GCCGGAACCG
CGCTACGCGC CGGACAATCC GCTCGACGCA TTCCGCACAA CCGTGGCGCG GCTGCACGAC
GCCGGCATCG AGGTGATCCT CGATGTCGTC TACAACCACA CCGCCGAGGG CAATCATCTC
GGCCCGACGC TGTCCTTCCG CGGCATCGAC AACGCCTCGT ATTACTGGCT GATGCCGGAC
AATCCGCGGT TCTACGATGA TTTCACCGGC TGCGGCAGCT CGGTCAATCT CAATCATCCG
CGTGTCCTGC AGATGGTGAT GGACAGTCTG CGCTACTGGG TCGAGGTCTG CCACGTCGAC
GGCTTCCGCT TCGACCTCGC CACCACGCTG GCGCGTGGAC CGAACGGTTA CGAGCGCAAT
TCCGGGTTCT TCACCGCGCT GCGTCAGGAC CCGGTGCTGG CCTCGGTGAA GCTGATCGCC
GAGCCGTGGG ACCTCGGCAT GGGCGGCTAT CAGGTCGGCG CGTTCCCGTC GCAATGGTCG
GAATGGAACG ACCGCTATCG CAGCGCGATG CGACGCTACT GGAGCGGCGA AGGCAGCCTG
ATCGGCGAAG TGTCGCGACG GATGACCGGC TCGTCCGACA TCTTCAACCA CGACAGCCGG
ATGCCGCGCG CCAGCATCAA CCACGTCACC GTGCACGACG GTTTCACGCT CGCGGATCTG
TTCAGCTACA ACGACAAGCA CAACCTCGCC AACGGCGAGG ACAACCGCGA CGGCTCCAAC
GACAATCACA GCAACAATTG CGGCCACGAG GGCCCGACCG ACGATCCGAC GATCGTCGCG
CTGCGCCGCC AGCTCCGCAA GAACCAGTTG GCCTGTCTGT TTCTGGCCCA GGGCGTTCCG
CTGATGCTCG CCGGCGACGA AGTCGGCAAC TCGCAGAACG GCAACAACAA CGCCTATTGC
CAGGACAACG ACATCGGGTG GGTCAATTGG GACGGCCTCA ATCGCGAAGA CGACATGGTC
GATTTCGTCG GCCTGATGAG CGAGATCCGC CGCCGCTTTC CGCAGATCCG CTCGCGTCGA
TGGCTCGACG GCCGGCGCGC CGACGGGTCC TATGGGGTAC TGTGGCTGAC GCCATCGGCC
ACCGAGATGA CGGAGCAGGA TTGGGCGTTT CCGGACGGAC GGTTTCTCGC CTACGTGCTG
AGCCCCTCCG AGCCGGGTGC CGAAGCGATC TTCATCGTGC TCAATTCGGG CGCCGAGAAG
ATCCGGTTTC AGCTGCCGAA ATTGCCTGAA TATCAGGACT GGCACCAATT GTTCGATACG
ACCAAGGACA GCGTCCAGGT CGCGCCGCTA CCGGCAGGCA GCGAAACGTC GGCACCGCCG
CGCTCGGTGC TGGCGTTTTC CGGAGCGGGC GCATGA
|
|---|
| Protein sequence | MRLTAGSCSR LGATWDGRGT NFALFSANAH KVELCLFDSQ GRRELERIEL PERTEDVWHG
YLNDVSPGQL YGYRVHGPYD PERGHRFNAH KLLLDPYAKR LSGRLVWSDA HFAYRAGSPR
EDLSFDRRDN ARGMPKAVVV DETGGFSRHE SRPNIPWEDT IIYEAHVKGL TQLREDVPPG
LRGTFGGLAA PAMIDHFKRL GVTAIELLPV HALIDDRVLV EKKLVNYWGY NTISFFAPEP
RYAPDNPLDA FRTTVARLHD AGIEVILDVV YNHTAEGNHL GPTLSFRGID NASYYWLMPD
NPRFYDDFTG CGSSVNLNHP RVLQMVMDSL RYWVEVCHVD GFRFDLATTL ARGPNGYERN
SGFFTALRQD PVLASVKLIA EPWDLGMGGY QVGAFPSQWS EWNDRYRSAM RRYWSGEGSL
IGEVSRRMTG SSDIFNHDSR MPRASINHVT VHDGFTLADL FSYNDKHNLA NGEDNRDGSN
DNHSNNCGHE GPTDDPTIVA LRRQLRKNQL ACLFLAQGVP LMLAGDEVGN SQNGNNNAYC
QDNDIGWVNW DGLNREDDMV DFVGLMSEIR RRFPQIRSRR WLDGRRADGS YGVLWLTPSA
TEMTEQDWAF PDGRFLAYVL SPSEPGAEAI FIVLNSGAEK IRFQLPKLPE YQDWHQLFDT
TKDSVQVAPL PAGSETSAPP RSVLAFSGAG A
|
|---|
| |