| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1880 |
|---|
| Symbol | |
|---|
| ID | 3908075 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 2145200 |
|---|
| End bp | 2146963 |
|---|
| Gene Length | 1764 bp |
|---|
| Protein Length | 587 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637883774 |
|---|
| Product | malto-oligosyltrehalose trehalohydrolase |
|---|
| Protein accession | YP_485499 |
|---|
| Protein GI | 86749003 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0296] 1,4-alpha-glucan branching enzyme |
|---|
| TIGRFAM ID | [TIGR02402] malto-oligosyltrehalose trehalohydrolase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGGGGC GGAGCTTCGG CCCGCGGCTG ACCGAGAACG GCGCCGAATT CCGGCTGTGG
GCTCCCAACG CAACGCGCGT CGACGTCGTG CTCGATCGTC CGCATGCGAT GCAACGCGAC
AAGGACGGCT GGTTCAAGGT CGAGATCGAC GGGGCGCGCG GCGGCACGCG CTATCGCTTC
CGCATCGACG ATACGACCGA CGTTCCTGAT CCCGCATCCG GCTTCCAGCC CGAGGATATT
CAGGGCCCGA GCGAAGTGAT CGATCATGCG GCCTATCCGT GGCGCGCCGG CGAATGGCGT
GGTCGGCCGT GGCACGAGAC GGTGCTGCTG GAAGCGCATG TCGGCAGCTT CACGCCGCAG
GGGACGTTCC GCGCGATGAT CGACCGGCTC GATCATCTGG TCGACACCGG CGTGACCGCG
CTGGAGCTGA TGCCGCTGGC GGATTTTCCC GGGCGCCGCA ATTGGGGTTA TGACGGCGTG
CTGTGGTACG CACCCGACAG CGCCTATGGG CGGCCGGAGG ATCTCAAGGC GCTGATCGAC
GCGGCGCACG AGCGCGGCCT GATGATGTTC CTCGACGTCG TCTACAATCA TTTCGGCCCC
GAAGGAAACT ACATCGGCCA ATACGCGCCG CCGTTCTTCT CGGATTCGCA CACGCCGTGG
GGCAACGGGA TCAATTACGA CGTCGAACAG GTCCGGGCCT TCGCGATCGA GAATGCCGTG
TACTGGCTAC GCGAATATCA TTTCGACGGG TTGCGCCTCG ATGCCGTGCA CGCCATCCCG
GATCAGGGCG AAATCCCGAT GCTGCACGAA CTGAGCCGGG AAGTCGGCAA GCTCGCCGCA
GAGACCGGCC GCCACATCCA CCTGGTGCTC GAAAACGACG ACAACATCGC CGCCGTCCTC
GATCCTGTCG TCGATCCCCC GCGCGGACAG TATCGCGCGC AATGGAACGA CGACTATCAC
CACGCCTGGC ACGTCGCCCT GACCGGCGAG AAGCAGGGGT ACTATTCCGA CTATGCAGAC
GCGCCGCTGA ACGCCATCGC CCGCGCGCTG GGCTCGGGCT TCGTCTATCA GGGCGAGCCG
TCCGGGCATC GCGGCGGTCA GCCGCGCGGC GAGCCCAGCG GCAAGCTGCC GCCGCTCGCT
TTCGTCAATT TCCTGCAGAA CCACGATCAG ATCGGCAATC GCGCGCTCGG CGACAGGCTG
GAAAGCCTGG CGAAGCCGAA GGCGGTCGAA GCCGCGCTCG CGATCACGCT GCTGGCGCCG
ACGATCCCGA TGTTGTTCAT GGGCGAGGAA TGGGGATCGC AGGCGCCGTT TCCGTTCTTC
TGCGATTTCC ACGGCGAACT CGCCGATGCC GTCCGCCGGG GTCGACGCAA GGAATTCGCC
GGCGCCTACG AGACATACGG CGACGAGGTC CCCGACCCGC TCGACGAATC GACCTTCAAG
AGCGCGGTCA TCGACTGGAG CGAGCGCGAC GACGGCCGCG GCGCAGCGCG GCTGGCGCTC
GTGAAGCGGC TGCTCGACAT CCGGCGCAAC ACTCTCGTGC CGCGCCTGCC AGGCGCCCGC
TTCGGCAATG CCGAGATCGC CGAGGACGGC CTGCTCCGCG CCCGCTGGCG GCTCGGAGAC
GGCGCCACGC TCAAGCTCGT CGCCAATCTG TCGGACCACG ACGTCGCCTT CAAGGCACCG
CCCGATGGAA CTAATGTGTG GGGCGACGAT TGGAACGGGA TGATTCCGCC GTGGGCGGTG
ACCTGGCGCC TCGAAGAGTC CTGA
|
|---|
| Protein sequence | MKGRSFGPRL TENGAEFRLW APNATRVDVV LDRPHAMQRD KDGWFKVEID GARGGTRYRF
RIDDTTDVPD PASGFQPEDI QGPSEVIDHA AYPWRAGEWR GRPWHETVLL EAHVGSFTPQ
GTFRAMIDRL DHLVDTGVTA LELMPLADFP GRRNWGYDGV LWYAPDSAYG RPEDLKALID
AAHERGLMMF LDVVYNHFGP EGNYIGQYAP PFFSDSHTPW GNGINYDVEQ VRAFAIENAV
YWLREYHFDG LRLDAVHAIP DQGEIPMLHE LSREVGKLAA ETGRHIHLVL ENDDNIAAVL
DPVVDPPRGQ YRAQWNDDYH HAWHVALTGE KQGYYSDYAD APLNAIARAL GSGFVYQGEP
SGHRGGQPRG EPSGKLPPLA FVNFLQNHDQ IGNRALGDRL ESLAKPKAVE AALAITLLAP
TIPMLFMGEE WGSQAPFPFF CDFHGELADA VRRGRRKEFA GAYETYGDEV PDPLDESTFK
SAVIDWSERD DGRGAARLAL VKRLLDIRRN TLVPRLPGAR FGNAEIAEDG LLRARWRLGD
GATLKLVANL SDHDVAFKAP PDGTNVWGDD WNGMIPPWAV TWRLEES
|
|---|
| |