| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1876 |
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| Symbol | ligD |
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| ID | 3908071 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 2138794 |
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| End bp | 2141538 |
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| Gene Length | 2745 bp |
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| Protein Length | 914 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637883770 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_485495 |
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| Protein GI | 86748999 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.907588 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGGCCA GCAAGACCCT CACCCTGTAT CGCAACAAGC GCGACTTCGA ACAGACCGCC
GAGCCGCGCG GCGATGCCGA GGTCGTGCCG TCGAAGCGGC GGCGCTTCGT AATTCAGAAG
CACGACGCGA CGCGGCTGCA CTACGACCTG CGGCTCGAAT ATGACGGCGT GTTCAAGTCC
TGGGCGGTGA CGCGCGGCCC ATCGCTCGAT CCACGCGACA AGCGGCTCGC GGTCGAGGTC
GAGGACCACC CGCTCGACTA CGGCGACTTC GAAGGCACCA TTCCCAAGGG CCAGTACGGC
GGCGGCACGG TGCAACTCTG GGACCGCGGC TATTGGGACT GCGATGATCC CGAGCGGGGG
TTCAAGACCG GCGATCTGAA ATTCACGCTC GACGGCGAGA AGGTGCACGG CAGCTGGGTG
CTGGTGCGGA TGCGCCACGA CCGCAACGGC GGCAAGCGGA CCAACTGGCT GCTGATCAAG
CATCGCGACG ACGACGCCCG CGAGGGCAAG GCCAACGACA TTCTCGACGA GGATCGCTCG
GTGGCGTCGG GCCGGACCAT GAAGCAGATC GCCGAAGGCA AGGGGCGGGC GCCGAAGCCG
TTCATGACAG GCAAGGTGGC GCGGGTGAAG GCCGACGCGG TGTGGGACTC GAACAAGGGG
CTGGCCGCGG ACGCGCGCGC GGCCGACGAC GCCGGAAAGG CGGCGAGACC CAAGCGCGCC
GCGGCGAAGA AGGCGCCGAA GAAGGCCGCA GCGAAGTCCC GCACAACGAA GACGACGTCG
AGGGCCACGC GCAAGCCGGT GAAGGTCGCC GCAATGCCGG ACTTCATCCC GCCGCAGCTC
TGCACTTCGG TCGAGCGTCC GCCCGGCAGC GACGGCTGGC GCCACGAGAT CAAGTTCGAC
GGCTATCGGA TGCAGTTGCG CATCGCGCAC GGCGAGGCTG CGCTCAGGAC CCGCAAGGGG
CTCGACTGGA CCGCGAAATT TCGGGCGATC GCCGACGAGG CTGCGGGCCT GCCGGATGCG
ATCATCGACA CCGAGATCGT CGCGCTCGAT CATCACGGCC ATCCCGACTT CGCGGCGTTG
CAGGCGGCGC TGTCGGACGG CGACAGCGAC AAGCTGATCT GCTTTGCGTT CGATCTGCTC
TATGCCGACG GTGAGGATCT ACGGTCTTTG CCGCTGTCCG AGCGCAAGCA GCGCCTGCAA
GATCTGCTCA AAGCCGCGCG CGGACGTCGC AAGGAAGGCC TGATCCGCTA TGTCGAGCAC
TTCGAGACCG GCGGCGATGC CATCCTGCAA TCGGCCTGCA AGCTGTCGCT CGAAGGCATC
GTCTCCAAGA AGCTGGACGC GCCGTATCGC TCCGGCCGCA GCGACAACTG GACCAAGGCG
AAGTGCCGTG CCGGGCACGA GGTGGTGATC GGCGGCTGGA AAACGACGGC CGGCAAATTC
CGGTCGCTGA TGGTCGGCGT GCAGAGCGAC GATCGCGCGG GGAATCATCA TTTGGCTTAC
GTCGGCCTGG TCGGCACCGG ATTCGGCCAG GACGTGGTGA AGCGCATCCT GCCCGAGTTG
AAGGCGCGCG CATCAAAGGA CAATCCGTTC GCGGGCGAAA ACGCGCCGCG CAAGACCAGC
GACGTGAATT GGGTGACACC GGACCTGGTC GCCGAGATCG AATTCGCCGG CTTCACCGGC
GCCGGCATGG TGCGGCAGGC GGCGTTCAAG GGGCTGCGCG CCGACAAGCC GGCGGACGAA
GTCGTGGCGG AGAAGCCTGC CCAGGTCGGG ATCGCGCGGC CGAAGCCGAA GCGCGGGACG
AAAGCAGCCC CGGCTGTGCG GAAAGTCGCG TCCGCCGCCA GCCGCGCCGA GGTGATGGGA
ATCTCGATCT CCAAGCCGGA CAAGGTGCTG TGGCCGGCGA GCGAGATCAG CGAGGCGATC
ACCAAGCTCG ACCTCGCACA TTACTACGAA GCGGTCGGCG ACTGGCTGAT CGCGCACATC
AAAGGGCGGC CGTGCTCGAT CGTGCGGGCG CCCGACGGCA TCGACGGCGA GCATTTCTTC
CAGCGCCATG CGATGCCCGG GATGTCGAAC CTGATCGACC TCGCGAAGGT CTCCGGTGAC
CGCAAGCCCT ATGTCCAGAT CGATCGTGTC GAAGGGCTGA TCGCGGTGGC GCAGATCGGC
GGCCTCGAAC TGCATCCGTG GAACTGCGCG CCCGGCGCCT ACGACGTACC AGGGCGGCTC
GTGTTCGATC TCGATCCCGC CCCGGATGTC GGCTTCGACG ACGTGGTCGC CGCGGCACGC
GAAATGAAAG ACCGACTGGA GACGATCGGA CTGTCGACGT TCTGCAAGAC CACCGGCGGT
AAGGGACTGC ACGTCGTGGT GCCGCTGCAG CCGAAGGACG ACGTCGACTG GAAGCAGGCC
AAGATATTCG CGCAGACGGT GTGCGCGCAG ATGGCCGACG ACAGTCCTGA GCGTTATCTG
CTCAACATGT CGAAGCAGCA GCGCAAGGGA AAGATCTTCC TCGACTACCT GCGCAACGAC
CGGATGTCGA CGGCGGTCGC GGCGCTGTCC CCCCGGGCGC GCGAGGGAGC CACTGTATCG
ATGCCGGTGA CCTGGAGTCA GGTCAAAGCG GGCCTCGATC CGAAGCGGTT CACGCTGGGT
ACGGTGCCGG CCCTGCTTCG CAAGACCAAG GCGTGGGCGG ACTACGACGA ATCAGCGGCC
CCGCTGAGGG CGGCGCTCGA GGCGCTCGCA TCCAGCGGGG CTTGA
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| Protein sequence | MAASKTLTLY RNKRDFEQTA EPRGDAEVVP SKRRRFVIQK HDATRLHYDL RLEYDGVFKS
WAVTRGPSLD PRDKRLAVEV EDHPLDYGDF EGTIPKGQYG GGTVQLWDRG YWDCDDPERG
FKTGDLKFTL DGEKVHGSWV LVRMRHDRNG GKRTNWLLIK HRDDDAREGK ANDILDEDRS
VASGRTMKQI AEGKGRAPKP FMTGKVARVK ADAVWDSNKG LAADARAADD AGKAARPKRA
AAKKAPKKAA AKSRTTKTTS RATRKPVKVA AMPDFIPPQL CTSVERPPGS DGWRHEIKFD
GYRMQLRIAH GEAALRTRKG LDWTAKFRAI ADEAAGLPDA IIDTEIVALD HHGHPDFAAL
QAALSDGDSD KLICFAFDLL YADGEDLRSL PLSERKQRLQ DLLKAARGRR KEGLIRYVEH
FETGGDAILQ SACKLSLEGI VSKKLDAPYR SGRSDNWTKA KCRAGHEVVI GGWKTTAGKF
RSLMVGVQSD DRAGNHHLAY VGLVGTGFGQ DVVKRILPEL KARASKDNPF AGENAPRKTS
DVNWVTPDLV AEIEFAGFTG AGMVRQAAFK GLRADKPADE VVAEKPAQVG IARPKPKRGT
KAAPAVRKVA SAASRAEVMG ISISKPDKVL WPASEISEAI TKLDLAHYYE AVGDWLIAHI
KGRPCSIVRA PDGIDGEHFF QRHAMPGMSN LIDLAKVSGD RKPYVQIDRV EGLIAVAQIG
GLELHPWNCA PGAYDVPGRL VFDLDPAPDV GFDDVVAAAR EMKDRLETIG LSTFCKTTGG
KGLHVVVPLQ PKDDVDWKQA KIFAQTVCAQ MADDSPERYL LNMSKQQRKG KIFLDYLRND
RMSTAVAALS PRAREGATVS MPVTWSQVKA GLDPKRFTLG TVPALLRKTK AWADYDESAA
PLRAALEALA SSGA
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