| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1869 |
|---|
| Symbol | |
|---|
| ID | 3908064 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 2132169 |
|---|
| End bp | 2133731 |
|---|
| Gene Length | 1563 bp |
|---|
| Protein Length | 520 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637883763 |
|---|
| Product | acyl-CoA synthetase |
|---|
| Protein accession | YP_485488 |
|---|
| Protein GI | 86748992 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.895381 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.153581 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGACG CCCTCTACGC CTTCCCCACC GCCTGCACGC AGACGCTGCG TGCGCTGTCG
CGCTATCCGT CGCGCAATGC CTTCGCGTGG CCGGGCGGCA GCATGAGCTA TCGCGGCGCG
ATCGACATGA TCGGCAGCAT CCAGAAGGTG TTCATGGGGC TCGGCATGGA GCCCGGCACG
CGCGTCGCGC TGCTCACCGC CAATCGCGCC GAGAGCTGGT GCGCGGGCGT CGCGGCGCAG
CTGTCGCGGT TTGCGATCAC CTGGCTGCAT CCGCTCGGCT CGCTGCAGGA CCAGCTCGAC
CAGATCGACG ATTCCGAGGC GGCGATCCTG CTGATCGACG CCGCGGCGTT CCTGCAGCGC
GGCGGCGAGC TTGCCGGGCA AGCGAGCAAG CTGCGGCACG TCTTCACGCT CGGGCGCGCC
GACTACGGCG TCGACCTGCT GGTCGCGATC GACAAGGCGG GCTCCGCAAC GCCGCGCGAC
TTCGCCCGGA TCGACGACGT CGCGGTGCTG AACTACACCG GCGGCACCAC CGGAAAATCC
AAGGGCGCAC TGCGTCGGCA TCGCGAGAAC GCCGGCTTCG CGGCAGCGAT CCTCGCCGAT
TTCGAGATCC CAATGGACCC GCGCTATCTG ACGGTGGCGC CGATCAGCCA TGTCGCCGGG
ACCAAGGTGC TGCCGGCGCT GATGCGCGGC GGCACCGTGC ACATGCTGAA GGGCTTCGAT
CCGGAGGCGG TCCTCGCCAC GATCGAACGC GAGCGCATCA ACTTCACGCT GTTCGTGCCG
ACCATGGTCT ATGTGCTGCT CGATCATCCG AAGCTGGCGA GCACCGATCT CTCCTCGCTT
GAGCTGGTGC TGTACGGCGC CTCGCCGATG TCGCCGACGC GCCTCGTCGA AGGCATCGAA
CGAATCGGCC CGGTGTTCTC GCAGCTCTAC GGCCAGACCG AGTGTTACCC GGTGTCGGTG
CTGCGCAAGG CCGATCACGA TCCGAAGCAG CCCGAGCTGT TCCTGTCCTG CGGCTTTCCG
ATCGCCGCCT GCGACGCGCG GATCCTCGAC GAGAACGATC AGGAGGTCGC GACCGGCGAG
TCCGGCGAAA TCTGCGTGCG CGCGCCGCAT GTGATGGCGG AATACTGGAA GCGTCCCGAG
CAGACCGCCG AGACGCTGAA GAACGGCTGG CTGCACACCG GCGACATCGC GCGGCGCGAC
GATCGCGGCT ACATGTACAT TCTCGACCGC AAGAAGGACA TGATCGTGTC CGGCGGCTTC
AACATCTTCC CGCGCGAGGT CGAGGACGTG CTGTCGACGC ATCGCGACGT CGCGATGGTC
GCCGTCGTCG GCGTTCCCGA CGACAAATGG GGCGAAGCCG TCACCGCGAT CGTCGTCGCC
CGCGCAGGTA GCAAGCCGGA CGAGCAGGAA TTGATCGAAC TGGTGAAGAG CCGCAAGGGC
TCCGCGCACG CGCCGAAGCA GATCAAATTC GTCAGCGAAC TGCCGATGAC CGGCGTCGGC
AAGATCGACA AGAAGGTGCT GCGCGCCGAT TTCTGGAAGG GCCGCGACCG GATGGTGGGT
TAG
|
|---|
| Protein sequence | MTDALYAFPT ACTQTLRALS RYPSRNAFAW PGGSMSYRGA IDMIGSIQKV FMGLGMEPGT
RVALLTANRA ESWCAGVAAQ LSRFAITWLH PLGSLQDQLD QIDDSEAAIL LIDAAAFLQR
GGELAGQASK LRHVFTLGRA DYGVDLLVAI DKAGSATPRD FARIDDVAVL NYTGGTTGKS
KGALRRHREN AGFAAAILAD FEIPMDPRYL TVAPISHVAG TKVLPALMRG GTVHMLKGFD
PEAVLATIER ERINFTLFVP TMVYVLLDHP KLASTDLSSL ELVLYGASPM SPTRLVEGIE
RIGPVFSQLY GQTECYPVSV LRKADHDPKQ PELFLSCGFP IAACDARILD ENDQEVATGE
SGEICVRAPH VMAEYWKRPE QTAETLKNGW LHTGDIARRD DRGYMYILDR KKDMIVSGGF
NIFPREVEDV LSTHRDVAMV AVVGVPDDKW GEAVTAIVVA RAGSKPDEQE LIELVKSRKG
SAHAPKQIKF VSELPMTGVG KIDKKVLRAD FWKGRDRMVG
|
|---|
| |