| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1832 |
|---|
| Symbol | |
|---|
| ID | 3908991 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 2096608 |
|---|
| End bp | 2098359 |
|---|
| Gene Length | 1752 bp |
|---|
| Protein Length | 583 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637883726 |
|---|
| Product | ABC transporter-like |
|---|
| Protein accession | YP_485451 |
|---|
| Protein GI | 86748955 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4178] ABC-type uncharacterized transport system, permease and ATPase components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 7 |
|---|
| Fosmid unclonability p-value | 0.0566621 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACCAACA TCCGATCCAC CCTGGCGACC GTCTGGCGCA TCGCGGTGCC GTATTTCAAA
TCCGAAGACC GCCGGATGGG CCGCATCCTG CTGGCGACGG TGGTCGTCAT CGAACTCGCC
GTGGTCGGCC TCGCGGTGCT GTTCAATCGC TGGAACAACG TTTTCTACAA CGCGCTGCAG
GAGCGCGACT ACAACGTGTT CGCCTATCAG CTCGGCTATT TCTGCGTGCT CGCGGCGATC
TTCATCGCGC TCAAGGTCTA TCAGCTCTAT CTCAACCAGT GGCTGCAGAT CCGCTGGCGG
CGCTGGATGA CCGAGCGTTA TCTCGGCGAA TGGCTGCACG ATTCCAACCA CTACCAGATG
CAGCTCCAGG GCGACGCCGC CGACAACCCG GATCAGCGCA TCGCCGAAGA CACCCAGATG
TTCGTCGAGC GCACGCTGCT GCTGGGTATC GGCCTGCTGA ATTCGGTGGT GACGCTGGCC
TCGTTCGTCG TCATCCTCTG GGGCCTTTCC AATGAAGCGC CGCTGCACGT GTTCGGCCAG
GATGTTCCGA TCCCGGGCTA TCTGGTGTGG GGGGCGCTGA TCTACGCGAC CATCGGCACC
GCGCTGACGC ACTGGATCGG CTCGCCGCTG GCGGATTTGA ACTTCCGCCA ACAGCGCTTC
GAGGCCGATT TCCGCTTCAA CCTGGTGCGG GCGCGCGAAA ACTCCGAGCA GATCGCACTG
CTGCGCGGCG AGACCGCCGA GCGCGGCAAG CTGTCGTCGC GGTTCGGGCT GGTCGCCGAT
AATTTCATGC GGATCATGTC CCGGACCAAG AAGTTGACCG CGTTCACGGC GAGCTACTCG
CAGGCCTCGA TCATCTTTCC CTACATCCTG GTGGCCCCGG CTTATTTCGC CCAGAGGGTT
CAGCTCGGCG GCCTGATGCA GACCGCATCG GCCTTCAACA GCGTCCAGGA TTCGCTGTCG
TTCTTCGTCA CCGCCTACCG CACCCTGGCG GAGTGGCAAT CGGTGGTCGC CCGGCTCGAC
GGCTTCGAGG CCTCGATCCG GAACGCAACC GCGCAGCGCG CCAATCCCGG CATCAGCCGC
GTGGTCGCGC AGTCCGGTGA TGCGATCGGT CTCGACGATC TCGAGCTGAC TTTGCCCGCC
GGGCAGCCGC TGATGCGTGC GGACGATTTC CGGATCAGCG GCAAACAGCG CACGCTGATC
GCCGGGCCGT CCGGCTCCGG CAAGTCGACG CTGTTCCGCG CCATCGCGGG GATCTGGCCG
TTCGGCTCGG GCGCGATCGC GATCCCCGCC GGGGCGACGA TCATGATGCT GCCGCAGCGG
CCCTACTTTC CGGTCGGCGA ACTCCATGCC GCGATCGTCT ATCCGTCGGA GACCGCGGCG
TTCAGCGCCG CGCAGGTGGC CGAGGTGGTG AAAGACGTCG GGCTGCCGGC GCTGGCGGAC
CGGCTCGGCG AGCACGGCCA TTGGAACCGG ACGCTGTCGC TCGGCGAACA GCAGCGGCTC
GGCGTCGCGC GCGCACTGCT GCACGCGCCG AACTACCTGT TTCTGGACGA GGCCACCGCC
TCGCTGGACG AGCCATCGGA AGCGGCGCTG TACCGCCTGC TCGATCAGAA GCTGCCCGAC
ACCACCATCG TCTCGATCGG CCACCGCTCG ACGCTCAACG CCTTCCACGA CCGCGACGCC
GTGCTGGGCC GCTCCGGCGA CAGTTTCACG TTGCAGGACA AGGTGCGCAC CGTCGCGCCG
GCACAGAGCT GA
|
|---|
| Protein sequence | MTNIRSTLAT VWRIAVPYFK SEDRRMGRIL LATVVVIELA VVGLAVLFNR WNNVFYNALQ
ERDYNVFAYQ LGYFCVLAAI FIALKVYQLY LNQWLQIRWR RWMTERYLGE WLHDSNHYQM
QLQGDAADNP DQRIAEDTQM FVERTLLLGI GLLNSVVTLA SFVVILWGLS NEAPLHVFGQ
DVPIPGYLVW GALIYATIGT ALTHWIGSPL ADLNFRQQRF EADFRFNLVR ARENSEQIAL
LRGETAERGK LSSRFGLVAD NFMRIMSRTK KLTAFTASYS QASIIFPYIL VAPAYFAQRV
QLGGLMQTAS AFNSVQDSLS FFVTAYRTLA EWQSVVARLD GFEASIRNAT AQRANPGISR
VVAQSGDAIG LDDLELTLPA GQPLMRADDF RISGKQRTLI AGPSGSGKST LFRAIAGIWP
FGSGAIAIPA GATIMMLPQR PYFPVGELHA AIVYPSETAA FSAAQVAEVV KDVGLPALAD
RLGEHGHWNR TLSLGEQQRL GVARALLHAP NYLFLDEATA SLDEPSEAAL YRLLDQKLPD
TTIVSIGHRS TLNAFHDRDA VLGRSGDSFT LQDKVRTVAP AQS
|
|---|
| |