| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1813 |
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| Symbol | |
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| ID | 3908972 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 2072969 |
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| End bp | 2075302 |
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| Gene Length | 2334 bp |
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| Protein Length | 777 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637883707 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_485432 |
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| Protein GI | 86748936 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.223015 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.437082 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGCTTG CCAGCCAAAA ACACGACGCC GATCCTGAGA TGTCGCCGGC TATCCACGCC
GGGCTGGTCG AGTCGCTATT CATGAATCCG GCGCCGATGA TCGTCGGCGC GTTCGGGCCC
GCGATCGCCG GATCGGTGAT CGGGTTCGTC ACCGGCAATG TCTGGAATTG GCTCTGCGTT
CCCCTGTTTG TCCTGGTCGG TATCGCGCGC GCGATGCAGA TGCGCCGCTA CCGCGAGCGG
AACGCGCCGC TTTCGCAGCA CGATGCCGAT GTCTGGGAAA AGCGCTACCG GCTTGGCGCG
ATCACGCACG GCATTTCGCT CGGCATCTGG TCGTTGGTGG TCCTGCTGGA TACGCAGGAC
ACCGGCGCGC ACATGCTCTG CATCACCACC GTCGTGGCCT ACACATCGGC GGGCGTCGGC
CGCACCTTCG GACGGCCCAA GATCTTTCAT CTCCAGGTGC TGTTGAGCTG CGGACCTTTG
ATCATCGCGT TGATCATGGT CGGTGGCATC TACTATCTGG CGCTGGCTCT GCTCAGCACG
GTGTTCTTCA TCGCCATCCG GCAGGTGACG TCGAGCTTGC AGCGGATCTA TCTCGACGCC
TGGATCGGTC GGGAGCGGGA GGCGGCGCTG GCACACCAGT TCGATACGGC GCTGAACAAC
ATGCCGCACG GCCTGTGCAT GTTTCGCGCC GACGGGCGGC TGGCGGTGAT GAACAATCGC
TTCGCTGAAA TGATGAAGCT CGGCGGTGCG CTGGCCGAAG GCTCCCCGAG CGCGACCGAG
ATCGTCGCGA CCTGCGTGAC GGTGGGCGCC ATTTCGGCGT CGAGCGGCCG CCTGATTCTG
TCCGAGATCG ACAATTCCCT GGCCGGTGAG ATCGTCACCG TCGGCGACGA GCCGGCGCCG
CGCTCTTTGT CCTGGACATT CCAGCCGATG CCCGGCGGCG GCACGGTGGT GCTGGTCGAG
GACATCACCG AACGCCGCAA CGCCGAAGCG CGCATCGTGC ATCTGGCGCG TTACGACGAA
CTCACCACGT TGCCGAACCG GGTGCAGTTC CGTGACGAAA TCGAACGGAT CCTCTCGCTC
GAGCACGGCC ACGGCAAGAC GCGGCTGTCG GCACTGCTGT TCATCGATCT CGATCAGTTC
AAACAGGTCA ACGACACGCT CGGCCATCCC TTGGGCGACC GGCTGCTGTG CGCGGTCGCG
GACCGGTTGC GCGACATGCT GCGGCCGGAG GACTTCGTGG CGCGGTTCGG CGGCGACGAG
TTCGTCGTTT TCCAGCAGAA CGTCCGCTCC GACGAGGACG CGGCCGTGCT GGCGCGGCGG
ATCGTCGAGC GGCTCAGCGA CCGCTATCTG ATCGAGCATC ACGTCGTCGA GATCGGCGCC
TCGATCGGCA TCGCGATGAC CTCGCCCGGC ATTCGCGCCG ACATCCTGCT GAAAAACGCC
GACATGGCGC TGTATCGCGC CAAGGCCGAC GGCCGCGGCA CCTTCTGCTT TTTCCGCGAG
GAGATGGCGC ACACCGTCGA GGCGCGCCGC ATTCTCGAAC TCGATCTGCG CAAGGCGCTC
GCCAACGAGG AGTTCGAGCT CTACTACCAG CCGCTGGTCA ATCTCAAGAC CGGACGGATC
ACGACCTGCG AGGCGCTGCT GCGCTGGAAT CATCCGGTGC GCGGCACCGT GTCGCCGGTC
GACATCATCC CGGTCGCCGA AGAAATGGGC CTGATCGTCG ATCTCGGTCG CTGGATCCTG
CGCAAGGCGT GCATGGAATG TATGATGTGG CCGAAGCAGG TCAGCGTTGC GGTCAACTTC
TCCTCGCAGC AATTCCATCA GCGCGATATC CTCAACGAGG TGCGCTACGC GCTCGAGGTG
TCGGGCCTGC CGGCCAGCCG GCTCGAAATC GAGATCACCG AGTCCTCGCT GCTGCGCAAC
ACCCAGTTCA CCCACGACGC GCTCGCGCAA TTGCATGGCG AGGGCGTGCG GATCGCGCTC
GATGATTTCG GCACCGGCTA TTCGAGCCTG AGCTATCTGC ACACGTTCCC GCTGCAGAAG
GTCAAGATCG ATCGCTCCTT CCTCGAGGGC ATCGACAGCG ACCGGCCGCT CACGCTGCTG
CGTGGCGTGG CGCGGTTGAG CGCCGATCTC GGCATGTCCG TGGTGGTCGA GGGCATCGAG
ACCAACGAGC AGCTCGAGCT GATCAGTGCC GACGGCACCG TCACCGAAGC GCAGGGCTAT
TTGTTCAGCC GCCCGGTTCC CGCTGCCCGC GTCCGGAAGC TGCTGACCGC CTCGCACGGC
GAGCGTCAGA AGGACGGCAA GGTGCTGTCG ATTCCGCTCC GCTCCATCGC CTGA
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| Protein sequence | MQLASQKHDA DPEMSPAIHA GLVESLFMNP APMIVGAFGP AIAGSVIGFV TGNVWNWLCV
PLFVLVGIAR AMQMRRYRER NAPLSQHDAD VWEKRYRLGA ITHGISLGIW SLVVLLDTQD
TGAHMLCITT VVAYTSAGVG RTFGRPKIFH LQVLLSCGPL IIALIMVGGI YYLALALLST
VFFIAIRQVT SSLQRIYLDA WIGREREAAL AHQFDTALNN MPHGLCMFRA DGRLAVMNNR
FAEMMKLGGA LAEGSPSATE IVATCVTVGA ISASSGRLIL SEIDNSLAGE IVTVGDEPAP
RSLSWTFQPM PGGGTVVLVE DITERRNAEA RIVHLARYDE LTTLPNRVQF RDEIERILSL
EHGHGKTRLS ALLFIDLDQF KQVNDTLGHP LGDRLLCAVA DRLRDMLRPE DFVARFGGDE
FVVFQQNVRS DEDAAVLARR IVERLSDRYL IEHHVVEIGA SIGIAMTSPG IRADILLKNA
DMALYRAKAD GRGTFCFFRE EMAHTVEARR ILELDLRKAL ANEEFELYYQ PLVNLKTGRI
TTCEALLRWN HPVRGTVSPV DIIPVAEEMG LIVDLGRWIL RKACMECMMW PKQVSVAVNF
SSQQFHQRDI LNEVRYALEV SGLPASRLEI EITESSLLRN TQFTHDALAQ LHGEGVRIAL
DDFGTGYSSL SYLHTFPLQK VKIDRSFLEG IDSDRPLTLL RGVARLSADL GMSVVVEGIE
TNEQLELISA DGTVTEAQGY LFSRPVPAAR VRKLLTASHG ERQKDGKVLS IPLRSIA
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