Gene RPB_1808 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_1808 
Symbol 
ID3908889 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp2067910 
End bp2068815 
Gene Length906 bp 
Protein Length301 aa 
Translation table11 
GC content72% 
IMG OID637883702 
ProductRNA polymerase sigma factor SigJ 
Protein accessionYP_485427 
Protein GI86748931 
COG category[K] Transcription 
COG ID[COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog 
TIGRFAM ID[TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02957] RNA polymerase sigma-70 factor, TIGR02957 family 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.505584 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.519453 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCAAAGC CTCCTGAGCC CACGATCAGC GACGACGCCG CAGCGAGCTT CGCAACGCTG 
CGCGCGCGGC TGGTCCGCGT CGCCTATCGC ATGCTCGGCT CGGTCGCCGA GGCCGAAGAC
GTGGTGCAGG ACGCTTACTT GCGCTGGCAC CGGACCGATC GCGCCGAGGT GCGCGATCCC
GCGGGGTTTC TGACCCGGAC CGTGACCCGG CTGTGCCTCG ACGTGCTGAA ATCGGCGCGG
CTCAGGCGCG AGACCTATAT CGGACCATGG CTGCCCGAGC CGCTGATCGC CGATCCGTGC
GAGGACGAGG GCGACGACAT CACGCTCACC TTGATGCTGG CGCTGGAGCG GCTGTCGCCG
CTCGAGCGCG CGGCGTTCCT GCTGCACGAC GTGTTCGGCC TCGGCTTCGA CGAGATCGCC
CGCACCCTCG ACCGCGACGC CGCCGCCTGC CGCCAGCTCG CCGCGCGCGC CCGCGGCCAT
GTCCGGGCCG AGCGGCCGCG CTTTCCGGTG TCGGAGGAGC GCGGCCAGGC GATCGCCGGG
GCGTTCTTCG AGGCGTCGCG CAGCGGCGAT CTGAAGGCGC TGACCGCGCT GCTCGCCGAC
GACGTGGTGT TCTACGGCGA CGGCGGCGGC AAGCGCCCGG CGACGCTGAA CCCGATCTTC
GGCCTCGCCA AAGTGGCCCG GCTGTTCGAA GGCCTCGCGC GCAAGCATGC CCCCGGTGCG
TCGGTCGTGG TCTCGACCGG GCGCATCGAC GGGCTGCCCG GCTTCGTCAC CACCGAGCCC
GACGGGCTGA TCCAGACCAC CGCGCTCGCC ATCGAACACG ACCGCATCGT CGCGATCTAT
GTGGTGCGCA ATCCGGACAA GCTGCGCCAT CTGCTGGCGC TCTCGGCCGT CCCCGCGCGG
CCCTGA
 
Protein sequence
MPKPPEPTIS DDAAASFATL RARLVRVAYR MLGSVAEAED VVQDAYLRWH RTDRAEVRDP 
AGFLTRTVTR LCLDVLKSAR LRRETYIGPW LPEPLIADPC EDEGDDITLT LMLALERLSP
LERAAFLLHD VFGLGFDEIA RTLDRDAAAC RQLAARARGH VRAERPRFPV SEERGQAIAG
AFFEASRSGD LKALTALLAD DVVFYGDGGG KRPATLNPIF GLAKVARLFE GLARKHAPGA
SVVVSTGRID GLPGFVTTEP DGLIQTTALA IEHDRIVAIY VVRNPDKLRH LLALSAVPAR
P