| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1795 |
|---|
| Symbol | |
|---|
| ID | 3908876 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 2055888 |
|---|
| End bp | 2057516 |
|---|
| Gene Length | 1629 bp |
|---|
| Protein Length | 542 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637883689 |
|---|
| Product | inner-membrane translocator |
|---|
| Protein accession | YP_485414 |
|---|
| Protein GI | 86748918 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0559] Branched-chain amino acid ABC-type transport system, permease components |
|---|
| TIGRFAM ID | [TIGR03409] urea ABC transporter, permease protein UrtB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.526146 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.212557 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCGTTGA TCCATTTGCT GCGCCCCTTG CTGTCGCGCC TGTTATTCGC CGCCGTCGCG
CTCGTTGTGC TTCATGTCGC GACCCAGCCG GCGCTGGCCG GTCCCTATGA GGATGCCGTC
GCGCAGTTCG CCGCGGGTTC GTTCTCCGAC ACCGAGGAAG CGATCGGCAG ACTGGTCGCG
TCGGCACATC CGCGCGCCGC CACCATCATC GTCGCGCTGC AGGACGGTCG ATTGTTCGCC
GACCCCGACG CCAAGACCGT GTTCATCAAG GCCGGGGACG GCGCGATCAG CAATGCGGTG
ACCGGCGAGG CCGTTGCCGC GCTGCCGGCG AAGGCCGAGG CGGTTCGCCT CAACAACAAG
CTGCGTCGCG CGGTGTCCGG CGCGATGGCC GGGCTGACGC TGCTGTCGCC GGATCTGACC
AAGCGCATCC AGGCGGCGCA GTCGGTGTTC AAGACCCACG ACGAGACCAT GCTGCCGACG
GTCGAGACCG CGCTGCAGGC CGAGAAAAAC GCCGCCGCCC GACAGGCCTT CGCCGAGGCG
CGCGCGTCGA TCCTGCTGTT CAAAACGGAC GCCTCCGACG TCGACAAGCT CGACGCCATC
GCCACCCTCA AGGCGCGCGG CGATCAGGAG GCGATGGCGC TCCTGACCGG TGTGCCGGGC
GGGCAGAGCG CGGCGGTGGC GAGCGGCATC GCATCCGCCA AGGCCGCGAT CGAGCGCAAT
CTGGCGCTGT GGTCGATGGT GCAGAACGCC TGGTACGGGC TGTCGCTCGG CTCGGTGCTG
CTGCTGGCCG CGATCGGCCT CGCCATCACC TTCGGGGTGA TGGGCGTGAT CAATATGGCG
CATGGCGAGA TGGTGATGCT CGGCGCCTAC ACCACCTTCG TGGTGCAGGA GACCATCCGC
ACCTCCTATC CGGCGCTGTT CGACTATTCG CTGCTGATCG CGGTGCCGCT GGCCTTCCTG
GTTGCGGGCG CGATCGGCGT GCTGATCGAG CGCAGCGTGA TCCGCTTCCT CTACGGTCGC
CCGCTGGAGA CGCTGCTGGC GACCTGGGGC CTGTCGCTGA TTCTGCAGCA GGCGGTGCGC
ACGCTGTTCG GCCCGACCAA TCGCGAGGTC GGCAATCCGT CCTGGATGAG CGGCGCGTTC
GAGCTCGGCC AGATTACCAT CACCTATAAC CGGCTGTGGA TTCTGTGCTT CACGCTCGCC
GTGTTCGTCA TTCTCTTGGC GATGCTGCGC TACACCGCGC TTGGCCTCGA AATGCGCGCG
GTGACACAGA ACCGCCGGAT GGCGGCGTCG ATGGGCATCG CCACCTCACG GGTCGATGCG
CTGACCTTCG GATTGGGTTC CGGCATCGCC GGCATCGCCG GGGTGGCGCT GTCGCAGATC
GATAACGTCA GCCCCAATCT CGGCCAGAGC TACATCATCG ACTCTTTCAT GGTCGTGGTG
TTCGGCGGCG TCGGCAATCT GTGGGGCACG CTGGTCGGTG CCTTCACGCT CGGCATCGCC
AATAAATTCC TGGAGCCGGT CGCCGGCGCG GTGCTGGCCA AGATCGCGAT CCTGGTGCTG
ATCATCCTGT TCATCCAGAA ACGCCCCCGC GGCCTGTTCG CGCTCAAGGG CAGGGCGGTG
GAGGCATGA
|
|---|
| Protein sequence | MPLIHLLRPL LSRLLFAAVA LVVLHVATQP ALAGPYEDAV AQFAAGSFSD TEEAIGRLVA
SAHPRAATII VALQDGRLFA DPDAKTVFIK AGDGAISNAV TGEAVAALPA KAEAVRLNNK
LRRAVSGAMA GLTLLSPDLT KRIQAAQSVF KTHDETMLPT VETALQAEKN AAARQAFAEA
RASILLFKTD ASDVDKLDAI ATLKARGDQE AMALLTGVPG GQSAAVASGI ASAKAAIERN
LALWSMVQNA WYGLSLGSVL LLAAIGLAIT FGVMGVINMA HGEMVMLGAY TTFVVQETIR
TSYPALFDYS LLIAVPLAFL VAGAIGVLIE RSVIRFLYGR PLETLLATWG LSLILQQAVR
TLFGPTNREV GNPSWMSGAF ELGQITITYN RLWILCFTLA VFVILLAMLR YTALGLEMRA
VTQNRRMAAS MGIATSRVDA LTFGLGSGIA GIAGVALSQI DNVSPNLGQS YIIDSFMVVV
FGGVGNLWGT LVGAFTLGIA NKFLEPVAGA VLAKIAILVL IILFIQKRPR GLFALKGRAV
EA
|
|---|
| |