| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1794 |
|---|
| Symbol | |
|---|
| ID | 3908875 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 2054427 |
|---|
| End bp | 2055749 |
|---|
| Gene Length | 1323 bp |
|---|
| Protein Length | 440 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 637883688 |
|---|
| Product | urea short-chain amide or branched-chain amino acid uptake ABC transporter periplasmic solute-binding protein precursor |
|---|
| Protein accession | YP_485413 |
|---|
| Protein GI | 86748917 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | [TIGR03407] urea ABC transporter, urea binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.326487 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTATTG GATCAAAGCA TCATCAGGCG ACGCCGGTCA GCCGGCGCAA ATGGCTGGCG
GCCGCCGCCG GTCTGGCCAT CGGCCTGTCG ACCTTCGCGC CCGCCAAGGC TGCCGACGAC
ACCATCAAGG TCGGCGTGCT GCACTCTCTG TCCGGCACCA TGGCGATCAG CGAAACCACG
CTGAAGGACA CGGTGCTGTT CCTGATCGAC GAGCAGAACA AGAAGGGCGG CGTGCTCGGC
AAGAAGCTCG AGGCGGTCGT GGTCGATCCG GCGTCGAACT GGCCGCTGTT CGCCGAGAAG
GCCCGCGAGC TGATCACCAA GGACAAGGTC TCGGTGGTGT TCGGCTGCTG GACCTCGGTG
TCGCGCAAAT CGGTGCTGCC GGTGTTCAAG GAGCTGAATT CGATCCTGTT CTATCCGGTG
CAGTACGAAG GCGAGGAGAG CGAGCGCAAC GTGTTCTACA CCGGCGCCGC GCCGAACCAG
CAGGCGATCC CGGCGGTCGA TTATCTCGCC AAGGAAGAAA AGGTGCAGCG CTGGGTGCTG
GCCGGCACCG ACTACGTCTA TCCGCGCACC ACGAATAAGA TTCTGGAAGC CTACTTGAAG
TCGAAAGGCG TCAAGCAGGA AGACATCATG ATCAATTACA CGCCGTTCGG TCATTCCGAC
TGGCAGACCA TCGTCGCCGA CATCAAGAAG TTCGGCTCGG CCGGCAAGAA GACCGCCGTG
GTCTCGACCA TCAACGGCGA CGCCAACGTG CCGTTCTACA AGGAACTCGG CAACCAGGGC
ATCAAGGCCA CCGACATTCC GGTGGTGGCG TTCTCGGTCG GCGAAGAAGA ACTCGCCGGC
ATCGACACCA AGCCGCTGCT CGGCCATCTC GCCGCCTGGA ACTACTTCCA GTCGATCAAG
GACCCCGAGA ACGAGAAGTT CATCAAGGCC TGGCAGGCCT ACACCAAGAA CCCGAAGCGC
GTGACCAACG ACCCGATGGA AGCCACCGTG ATCGGCTTCA ACATGTGGGT GAAGGCGGTC
GAGAAGGCCG GCACCGTCGA CGCCGACAAG GTGATCGACA CGCTGCCGGG CACCAAGGCG
CCGAACCTGA CCGGCGGCAC CTCGGAAATG CTGCCGAACC ACCACATCAC CAAGCCGGTG
TTCATCGGCG AGATCAAGGG TGACGGCCAG TTCGACGTGG TCTGGAAGAC CCCGGGCCTG
GTCCCCGGCG ACGCCTGGTC GAAGGAGCTC GACGGCTCCA AGGACCTGAT CGGCGACTGG
GTGACGCTGA AGTGCGGCAA CTACAACACC GTGACCAAGA AGTGCGGCGG CCAGGGGACC
TGA
|
|---|
| Protein sequence | MRIGSKHHQA TPVSRRKWLA AAAGLAIGLS TFAPAKAADD TIKVGVLHSL SGTMAISETT
LKDTVLFLID EQNKKGGVLG KKLEAVVVDP ASNWPLFAEK ARELITKDKV SVVFGCWTSV
SRKSVLPVFK ELNSILFYPV QYEGEESERN VFYTGAAPNQ QAIPAVDYLA KEEKVQRWVL
AGTDYVYPRT TNKILEAYLK SKGVKQEDIM INYTPFGHSD WQTIVADIKK FGSAGKKTAV
VSTINGDANV PFYKELGNQG IKATDIPVVA FSVGEEELAG IDTKPLLGHL AAWNYFQSIK
DPENEKFIKA WQAYTKNPKR VTNDPMEATV IGFNMWVKAV EKAGTVDADK VIDTLPGTKA
PNLTGGTSEM LPNHHITKPV FIGEIKGDGQ FDVVWKTPGL VPGDAWSKEL DGSKDLIGDW
VTLKCGNYNT VTKKCGGQGT
|
|---|
| |