| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1790 |
|---|
| Symbol | |
|---|
| ID | 3908871 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 2050853 |
|---|
| End bp | 2051473 |
|---|
| Gene Length | 621 bp |
|---|
| Protein Length | 206 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637883684 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_485409 |
|---|
| Protein GI | 86748913 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4961] Flp pilus assembly protein TadG |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.499021 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCGC TGGTGCAGAT CTGGGTCGAT GCGCGCCGTT GCAGCATGCG GCTGGCGAAG
GACCGCAGCG GGCTCGCGGC GACGGAATTC GCCTTCATCG TTCCGCTGAT GCTGCTGATG
TTCTTCGCCA CCGTCGAATT GTCGGCGGGC ATCGCAGTCG ACCGCAAGGT GACGCTGGTG
TCGCGCACGC TGTCGGATCT GGTGTCGCAG GCGACGACGG TGACCGACAG CGACCTGAAG
AACGTGTTCG CCGCGAGCTA CGGCGTGCTG GCGCCGTACC CGACCAGCAC CGCGGATGCG
ACGATTTCCG AGATCTACGT CAACGATGCC GGCGTCGCCA AGGTGCAGTG GAGCAAGGCC
GCGACCGTGG CGCAGAGCGG CAGCACCGCC ACCGCGACGC TCGCCACGTC GAGCCGCAAG
CAGGGCGACA CGATCACCAT CCCCGACGGT CTCAAGGTCG CCAAGACCTA TCTGATCTTC
AGCGAAGTGA AATACAAATA CGAGCCGGCC GTCGGTTACT TCGTCGCGAA GGCCGGCATC
AACCTCACCG ACCAGACCTA CACCCGGCCG CGGCAATCGA CCTGCGTGCT GTACGGCACC
GCGAGCTGCC CGACCTACTG A
|
|---|
| Protein sequence | MKALVQIWVD ARRCSMRLAK DRSGLAATEF AFIVPLMLLM FFATVELSAG IAVDRKVTLV
SRTLSDLVSQ ATTVTDSDLK NVFAASYGVL APYPTSTADA TISEIYVNDA GVAKVQWSKA
ATVAQSGSTA TATLATSSRK QGDTITIPDG LKVAKTYLIF SEVKYKYEPA VGYFVAKAGI
NLTDQTYTRP RQSTCVLYGT ASCPTY
|
|---|
| |