| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1786 |
|---|
| Symbol | |
|---|
| ID | 3908867 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 2048160 |
|---|
| End bp | 2048681 |
|---|
| Gene Length | 522 bp |
|---|
| Protein Length | 173 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637883680 |
|---|
| Product | peptidase A24A, prepilin type IV |
|---|
| Protein accession | YP_485405 |
|---|
| Protein GI | 86748909 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4960] Flp pilus assembly protein, protease CpaA |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.325157 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGCTG ACATCCTCCG CCTGCTGCTG TTTCCCGCGC TGATGGCGTT CGCCGCGGCG
AGCGACCTGT TCACGATGAC GATTTCCAAC CGCGTGTCGC TGCTGCTGGT GGCGGGCTTC
CTGGCGCTCG CGCCGATGTC GGGAATGAGC CTCGCCGATT TCGGCCTGCA TCTCGGCGCC
GGAATGACGG TGCTGGCGAT CGCGTTCGGA TGTTTCGCGA TGGGCTGGAT CGGCGGCGGC
GACGCCAAGG TCGCGGCGGC GGCGGCGCTG TGGTTCGGCT TCGCCCATCT GATGGATTTT
CTGCTCTACG CCTCGCTGTT CGGCGGCGCG CTGACGCTGC TGCTGCTCGG CTTCCGGCAA
TGGCCGCTGC CTTATCCGCT CGCCGGCCAG AGCTGGCTGC TGCGGCTCCA CGCCAAGGAG
ACCGGCATCC CCTACGGCAT CGCGCTCGCG ATCGGCGCAC TCGCGGTGTA TCCGCAAACG
GAGTGGATCA AAGCGGTGGA CCTCGGCCGG TTCGCGCTGT GA
|
|---|
| Protein sequence | MIADILRLLL FPALMAFAAA SDLFTMTISN RVSLLLVAGF LALAPMSGMS LADFGLHLGA
GMTVLAIAFG CFAMGWIGGG DAKVAAAAAL WFGFAHLMDF LLYASLFGGA LTLLLLGFRQ
WPLPYPLAGQ SWLLRLHAKE TGIPYGIALA IGALAVYPQT EWIKAVDLGR FAL
|
|---|
| |