Gene RPB_1785 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_1785 
Symbol 
ID3908866 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp2047239 
End bp2048036 
Gene Length798 bp 
Protein Length265 aa 
Translation table11 
GC content68% 
IMG OID637883679 
ProductFlp pilus assembly CpaB 
Protein accessionYP_485404 
Protein GI86748908 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3745] Flp pilus assembly protein CpaB 
TIGRFAM ID[TIGR03177] Flp pilus assembly protein CpaB 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.634606 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.33721 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAATACCG CGCGCATCGT CGTTCTTGTG ATTGCCGTCG GCGCCGGCGC CGTCGCCGCC 
TATCTGGCGA GCGGCATCGG CGGACAGGAG ACGGCCGGCC CGACCGCGCC CGTCGCCCAA
CTGGCGACGG TCGAAGTGCT GGTCGCGAAG TCCGACATCC CGCTCGGCCA GCCGGTCGGG
CCCTCGGACG TGCAGTGGCA GACCTGGCCG GCCGCCACCG CCAGCTCGAA TTTCATCCTT
CGCAGCGAGC GCCCCGACGC CAGCGTCCAG CTCGCCGGCT CGATCGCGCG GTCGCCCTTC
ATCGCCGGCG AACCGATCCG CGAACAGAAA CTGGTGAAGT CCAACGGCTC CGGCTTCATG
GCCGCGATCC TGCCGACCGG GATGCGCGCG ATCTCGACCG AGATCTCGCC GGAAACCGGC
GCCGGCGGCT TCATCCTGCC GAACGATCGC GTCGACGTCA TCCTGTCGAA GCGCGACCAG
AATCCCGATC GCGTCAAGGG CGGCGACGTC GTCAACTCCG AGATCATCCT CAGCAATATC
CGCATTCTGG CGATCGACCA GACCGTCGAG GAGAAGAACG GCCAGAAGGT CGTGGTCGGC
AAGACCGCGA CGCTCGAACT GAAACCCGAT CAGGCGGAAT TCCTGGCGCG TGCGCGGCAG
AGCGGCACCC TGTCGCTGGC GCTGCGCAGC CTCGCGGACG CCAACGCACC GGCCCGCACC
GAGGAGATCG GCGGCAAGCG CGACAGCATC AACGTGATTC GCTTCGGCGT TTCCACGCAA
ACGACGACGC CGAAGTGA
 
Protein sequence
MNTARIVVLV IAVGAGAVAA YLASGIGGQE TAGPTAPVAQ LATVEVLVAK SDIPLGQPVG 
PSDVQWQTWP AATASSNFIL RSERPDASVQ LAGSIARSPF IAGEPIREQK LVKSNGSGFM
AAILPTGMRA ISTEISPETG AGGFILPNDR VDVILSKRDQ NPDRVKGGDV VNSEIILSNI
RILAIDQTVE EKNGQKVVVG KTATLELKPD QAEFLARARQ SGTLSLALRS LADANAPART
EEIGGKRDSI NVIRFGVSTQ TTTPK