Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPB_1780 |
Symbol | |
ID | 3908861 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris HaA2 |
Kingdom | Bacteria |
Replicon accession | NC_007778 |
Strand | - |
Start bp | 2041305 |
End bp | 2042279 |
Gene Length | 975 bp |
Protein Length | 324 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 637883674 |
Product | type II secretion system protein |
Protein accession | YP_485399 |
Protein GI | 86748903 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4965] Flp pilus assembly protein TadB |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.131583 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGAGATGC AATCGCTAGC CCTCGGTTTC CTCGCCGCCG TCTCCGTCGG CGGGCTGGCC TGGGTCTTCA TCTATCCGCT GCTGTCCGGC GAGAAGCAGG CCGAACAACG CCGCACCTCG GTCGCGCGGA CGACGCCGGC GGTGCGACAG ATCGAGAAAT CGCAACGGTC GCGCCGCGAG CAGGTCGAAG GATCGCTGCG CGAGATCGAG GCGCGCAGCC AGAAGCAGAA GAACGTCTCG CTCGGCACCA AACTGACCCA GGCCGGGCTC GACTGGACGC CGAACAAGTT CATCGGCGTG TCGGCGGGGC TCGGCACCGT CGCGTTCGCC ACCACCATGA TCCTCGGCGG CGGATTGCTC GCGGCGGTCG GACTGGCCTT CGCGGCCGGC TTCGGCTTGC CGCGCTGGGT GCTGGGCTTT TTGAAGAAGC GCCGTGAAAA GAAATTCATC AATGCGCTGC CGGACGCCGT CGACGTCATC GTGCGCGGCA TCAAGGCCGG CCTGCCGCTG TTCGACTCGC TCAAGGTGGT CGCGGCGGAT TCGCCGGAGC CGCTGAAGAG CGAATTCAAC GCCATCATCG AAACCCAGGC GATCGGCATG CCGCTCGGCG AGGCCTGCGC CCGGCTGTAC GACCGGATGC CGCTGCCGGA AGCCAACTTC TTCGGCATCG TGATCTCGAT TCAGCAGAAG TCCGGCGGCA ATCTGTCGGA AGCGCTCGGC AACCTCTCCA AGGTGCTGCG CGACCGCAAG AAGATGGCCG AGAAGATCCA GGCGATGTCG ATGGAGGCTA AGGCCTCGGC CGCGATCATC GGCTCGCTGC CGCCGATCGT GATGCTGCTC GTCTACCTGT CGACGCCGGA CTACATCGCG CTGCTGTGGA CCCACCCGAC CGGCCGGCTG ATGCTGGCCG GCTGCGTGGT GTGGATGTCG GCGGGCATCC TGGTGATGAA GAAGATGATC AATTTCGACT TCTGA
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Protein sequence | MEMQSLALGF LAAVSVGGLA WVFIYPLLSG EKQAEQRRTS VARTTPAVRQ IEKSQRSRRE QVEGSLREIE ARSQKQKNVS LGTKLTQAGL DWTPNKFIGV SAGLGTVAFA TTMILGGGLL AAVGLAFAAG FGLPRWVLGF LKKRREKKFI NALPDAVDVI VRGIKAGLPL FDSLKVVAAD SPEPLKSEFN AIIETQAIGM PLGEACARLY DRMPLPEANF FGIVISIQQK SGGNLSEALG NLSKVLRDRK KMAEKIQAMS MEAKASAAII GSLPPIVMLL VYLSTPDYIA LLWTHPTGRL MLAGCVVWMS AGILVMKKMI NFDF
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