Gene RPB_1780 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_1780 
Symbol 
ID3908861 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp2041305 
End bp2042279 
Gene Length975 bp 
Protein Length324 aa 
Translation table11 
GC content65% 
IMG OID637883674 
Producttype II secretion system protein 
Protein accessionYP_485399 
Protein GI86748903 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4965] Flp pilus assembly protein TadB 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.131583 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAGATGC AATCGCTAGC CCTCGGTTTC CTCGCCGCCG TCTCCGTCGG CGGGCTGGCC 
TGGGTCTTCA TCTATCCGCT GCTGTCCGGC GAGAAGCAGG CCGAACAACG CCGCACCTCG
GTCGCGCGGA CGACGCCGGC GGTGCGACAG ATCGAGAAAT CGCAACGGTC GCGCCGCGAG
CAGGTCGAAG GATCGCTGCG CGAGATCGAG GCGCGCAGCC AGAAGCAGAA GAACGTCTCG
CTCGGCACCA AACTGACCCA GGCCGGGCTC GACTGGACGC CGAACAAGTT CATCGGCGTG
TCGGCGGGGC TCGGCACCGT CGCGTTCGCC ACCACCATGA TCCTCGGCGG CGGATTGCTC
GCGGCGGTCG GACTGGCCTT CGCGGCCGGC TTCGGCTTGC CGCGCTGGGT GCTGGGCTTT
TTGAAGAAGC GCCGTGAAAA GAAATTCATC AATGCGCTGC CGGACGCCGT CGACGTCATC
GTGCGCGGCA TCAAGGCCGG CCTGCCGCTG TTCGACTCGC TCAAGGTGGT CGCGGCGGAT
TCGCCGGAGC CGCTGAAGAG CGAATTCAAC GCCATCATCG AAACCCAGGC GATCGGCATG
CCGCTCGGCG AGGCCTGCGC CCGGCTGTAC GACCGGATGC CGCTGCCGGA AGCCAACTTC
TTCGGCATCG TGATCTCGAT TCAGCAGAAG TCCGGCGGCA ATCTGTCGGA AGCGCTCGGC
AACCTCTCCA AGGTGCTGCG CGACCGCAAG AAGATGGCCG AGAAGATCCA GGCGATGTCG
ATGGAGGCTA AGGCCTCGGC CGCGATCATC GGCTCGCTGC CGCCGATCGT GATGCTGCTC
GTCTACCTGT CGACGCCGGA CTACATCGCG CTGCTGTGGA CCCACCCGAC CGGCCGGCTG
ATGCTGGCCG GCTGCGTGGT GTGGATGTCG GCGGGCATCC TGGTGATGAA GAAGATGATC
AATTTCGACT TCTGA
 
Protein sequence
MEMQSLALGF LAAVSVGGLA WVFIYPLLSG EKQAEQRRTS VARTTPAVRQ IEKSQRSRRE 
QVEGSLREIE ARSQKQKNVS LGTKLTQAGL DWTPNKFIGV SAGLGTVAFA TTMILGGGLL
AAVGLAFAAG FGLPRWVLGF LKKRREKKFI NALPDAVDVI VRGIKAGLPL FDSLKVVAAD
SPEPLKSEFN AIIETQAIGM PLGEACARLY DRMPLPEANF FGIVISIQQK SGGNLSEALG
NLSKVLRDRK KMAEKIQAMS MEAKASAAII GSLPPIVMLL VYLSTPDYIA LLWTHPTGRL
MLAGCVVWMS AGILVMKKMI NFDF