| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1779 |
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| Symbol | |
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| ID | 3908860 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 2040319 |
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| End bp | 2041293 |
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| Gene Length | 975 bp |
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| Protein Length | 324 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637883673 |
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| Product | type II secretion system protein |
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| Protein accession | YP_485398 |
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| Protein GI | 86748902 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2064] Flp pilus assembly protein TadC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.708691 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.127788 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGACC TGCTGATCGA AAAATTTCAC GACGCCCGCT TCATGACGAT GCTGCTGGCG
GCGATCGCCG TCAGCGCCAC AGTGTATACG CTGGTGATGC CGCTGCTCGT CGGCGAGACC
TTGGCCAAGC GGATGAAAGC GGTCGGCAGC GAGCGCGAGC GGCTTCGCCA GCGCGAGCGC
GACCGGCTCG CCAAGGCCGA ACGGGTGTCG CTGCGGCAGG CACCCAAGCA GTTTGTCGCC
AAGATCGTCG ACGACCTCAA CCTCGGCAAG TGGGTGGCGC AGGAAAGCGC GCGCGACAAG
CTGGTGATGG CCGGCTATCG CGGCCAGGCG CCCTACATCA CCTTCCTGTT CTTCCGCATG
GTGATGCCGA TCGCGTTCGG CCTCGCGGCG GCGCTCTACG TGTTCGTGCT GTCGAACATG
GATCAGTCGA CGCCGATCAA GGTCGCTATC TGCATCGGCT GCGTGTTCCT CGGCATGCAG
GCGCCGATGC TGTTCCTGAA GAACGCCATC ACCAAGCGCC AGCTCTCGAT CCGGCGTGCG
TTTCCGGACG CGCTCGACCT GCTGCTGATC TGCATCGAAT CCGGCATGTC GATCGAGGCG
GCGTTCCGCA AGGTCGCGGT CGAGATCGGC ACCCAGTCGA TCCCGCTGGC GGAGGAATTC
ACGCTGACGA CGGCGGAGCT GTCCTATCTG CCCGACCGCA AACAGGCCTA TGAGAACCTG
GCGAAGCGCA CCGGGCTGGA CGGCGTCAAA TCGGTCTGCC TGGCGCTGCA GCAGTCGGAA
CGCTACGGCA CGCCGCTCAG CCAGAGCATC CGGGTGATGG CGCAGGAAAA CCGCGACATG
CGGATGAACG AGGCCGAGAA GAAGGCCGCG GCCTTGCCGC CGAAGCTGAC GGTGCCGATG
ATCCTGTTCT TCCTGCCGGT GCTGTTCGTG GTGATCCTCG GGCCGACCGG GATCAGGGTC
GCAGCGATGC AGTGA
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| Protein sequence | MIDLLIEKFH DARFMTMLLA AIAVSATVYT LVMPLLVGET LAKRMKAVGS ERERLRQRER
DRLAKAERVS LRQAPKQFVA KIVDDLNLGK WVAQESARDK LVMAGYRGQA PYITFLFFRM
VMPIAFGLAA ALYVFVLSNM DQSTPIKVAI CIGCVFLGMQ APMLFLKNAI TKRQLSIRRA
FPDALDLLLI CIESGMSIEA AFRKVAVEIG TQSIPLAEEF TLTTAELSYL PDRKQAYENL
AKRTGLDGVK SVCLALQQSE RYGTPLSQSI RVMAQENRDM RMNEAEKKAA ALPPKLTVPM
ILFFLPVLFV VILGPTGIRV AAMQ
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