Gene RPB_1774 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_1774 
Symbol 
ID3908855 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp2034842 
End bp2036479 
Gene Length1638 bp 
Protein Length545 aa 
Translation table11 
GC content66% 
IMG OID637883668 
ProductABC transporter related 
Protein accessionYP_485393 
Protein GI86748897 
COG category[R] General function prediction only 
COG ID[COG4172] ABC-type uncharacterized transport system, duplicated ATPase component 
TIGRFAM ID[TIGR02323] phosphonate C-P lyase system protein PhnK 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.846994 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0168825 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGACGCCC TCAACCAGCC TCTGCTCTCC GTCGACGATC TCTCGGTGGC GTTCCATCAG 
CAGAGCGGCA CCACCACCGC GGTCGATCGC ATCTCGTATC AGATCAGGCG CGGCGAGTGC
GTGGCATTGG TCGGCGAGTC CGGGTCGGGC AAATCGGTCA GCGCGCTGTC GATCCTGAAG
CTGCTGCCAT ATCCGACGGC GTCGCATCCG ACCGGGCAGA TCCGGTTCAA GGGCCGCGAG
CTGCTCGGCA TGTCGGAGAA CGACATCCGC GCCATCCGCG GCAACGAGAT TTCGATCATC
TTCCAGGAGC CGATGACCTC GCTCAATCCG CTGCACACGA TCGAGGCGCA GATCGGCGAG
ATCCTGCAAC TGCACGGCGG CCCGCGCGGC GCCAAGGCGC GGGCGCGCAT TCTGGAATTG
CTGACGCAGG TCGGCATCCC CGAGCCGGAA ACGCGGCTCG CCAGCTACCC GCATCAACTC
TCGGGCGGCC AGCGCCAGCG CGTGATGATC GCGATGGCGC TCGCCAACGA GCCGGACCTC
CTGATCGCCG ACGAGCCGAC CACCGCGCTC GACGTCACCG TGCAGGCACA GATCCTGGCG
CTGCTCGCCG ACATCCGTGC CCGGCTCGGC ATGAGCCTGT TGTTCATTAC CCATGATCTC
GGCATCGTGC GGCGCATCGC CGACGTCGTC TGCGTGATGA ACAACGGCAA GATCGTCGAA
CAGGGCCCGG TCGAGCAGGT GTTCACCGCA CCACAGCACG CCTACACCCG CGCGCTGCTC
GCCGCCGAGC CGAAGCCCGA TCCCGCGCCG CCGCGGCCCG AGCAGCCGGT GGTGATCTCG
ACCGACAATC TCAAGGTCTG GTTTCCGATC AAGCGCGGGC TGATGCGCAA GACCGTCGGC
CACATCAAGG CGGTCGACGG CGTCACGCTC GAAGTGCGCA AGGGCGAGAC GCTCGGCGTG
GTCGGCGAGT CCGGCTCCGG CAAGACCACC CTCGGTCTGG CGCTGCTGCG GCTGATCTCG
TCCGAAGGTC CAATCGTTTT TCTCAGCAGC GATATCCAGG GCCTGAAGTT CAAGGAGATG
CTGCCGTTCC GCCGCGACAT GCAAATCGTG TTTCAGGATC CGTTCGGCGC GCTCAGCCCG
CGCATGGCGA TCGGTGATAT CGTCGCCGAG GGCCTCAGCG TGCATCAGCC GCATCTGTCG
GAAGACGAGC GCGAGGCGCG GGTGATCAAG GCGCTGACCG ACGTCGGCCT GGATCCGGCG
ACGCGCTTCC GCTATCCGCA CGAATTCTCC GGCGGCCAGC GCCAGCGCAT CAGCATCGCG
CGTGCGGTGG TACTGGAGCC GAATTTCGTG GTGCTCGACG AGCCGACCAG CGCGCTCGAC
ATGCTGTTCC AGGCGCAGAT GGTCGATCTG TTGCGCGAGC TGCAGCGCAA GCGCGATCTG
ACCTACATGT TCATCTCGCA CGATCTGCGC GTGGTGGCGT CACTCGCCAG TCATCTGATC
GTCATGAAGC AGGGCAAGGT GGTCGAGGAA GGTCCTGCGG CGGAGCTGTT CAAACACCCG
AAGACCGACT ATACGCGTGC GCTGTTTGCC GCCGCGTTCC GGCTCGAGAC CGCTCCGGGC
GGCGGCGCCG CGCCATAG
 
Protein sequence
MDALNQPLLS VDDLSVAFHQ QSGTTTAVDR ISYQIRRGEC VALVGESGSG KSVSALSILK 
LLPYPTASHP TGQIRFKGRE LLGMSENDIR AIRGNEISII FQEPMTSLNP LHTIEAQIGE
ILQLHGGPRG AKARARILEL LTQVGIPEPE TRLASYPHQL SGGQRQRVMI AMALANEPDL
LIADEPTTAL DVTVQAQILA LLADIRARLG MSLLFITHDL GIVRRIADVV CVMNNGKIVE
QGPVEQVFTA PQHAYTRALL AAEPKPDPAP PRPEQPVVIS TDNLKVWFPI KRGLMRKTVG
HIKAVDGVTL EVRKGETLGV VGESGSGKTT LGLALLRLIS SEGPIVFLSS DIQGLKFKEM
LPFRRDMQIV FQDPFGALSP RMAIGDIVAE GLSVHQPHLS EDEREARVIK ALTDVGLDPA
TRFRYPHEFS GGQRQRISIA RAVVLEPNFV VLDEPTSALD MLFQAQMVDL LRELQRKRDL
TYMFISHDLR VVASLASHLI VMKQGKVVEE GPAAELFKHP KTDYTRALFA AAFRLETAPG
GGAAP