| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1729 |
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| Symbol | ispH |
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| ID | 3908254 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 1971758 |
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| End bp | 1972702 |
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| Gene Length | 945 bp |
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| Protein Length | 314 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637883623 |
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| Product | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase |
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| Protein accession | YP_485348 |
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| Protein GI | 86748852 |
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| COG category | [I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0761] Penicillin tolerance protein |
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| TIGRFAM ID | [TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0646404 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTCTGACG TTCGCCCTCT CGAAGTCTTT CTTGCCCAGC CCCGTGGTTT CTGTGCCGGC
GTCGTCCGCG CGATCGAGAT CGTCGAGCGC GCGCTGGAGA AATACGGCCC GCCGGTCTAT
GTGCGGCACG AAATCGTGCA CAACAAATAT GTGGTCGAGA GCCTGAAGGC GAAGGGCGCG
ATCTTCGTCG AGGAGCTTTC CGAGGTGCCG CCGAAGGCGG TGACCGTGTT CAGCGCCCAC
GGCGTCGCCC GCAGCATCGA GGAAGAGGCC GCTTCTCGCG GCCTGCCGGT GCTCAACGCC
ACCTGCCCGC TGGTCACCAA GGTGCACAAC CAGGGCAAGC GCTACACCGC CAAGGGCCGC
ACCCTGATCC TGATCGGCCA TGCCGGCCAC CCCGAGGTCG AGGGAACGAT GGGACAGGTT
CCCGGCCCGG TGCTGCTGGT GCAAAATCTC GACGATGTCG CCGCGCTGAC GCTGCCGTCG
GATACCCCGG TCGCCTACAT CACCCAGACC ACGCTCAGCG TCGACGACAC GCGGGACATC
ATCGCGGCGC TTTCAAAGCG ATTCTCGGAT ATCCAGGGCC CCGACACCCG CGATATCTGC
TATGCAACGC AGAACAGACA GTCTGCAGTT CGGGCCATGA GCAAGCTGGT CGATCTGATC
CTGGTGGTCG GCGCCAACAA CAGTTCCAAC TCCAACCGGC TCCGGGAAAT CGGCACCGAA
GCCGGCATTC CGAGTTATCT GATCTCGGAC GGCAGCGAGC TCAACCCGGA TTGGCTCGAA
GGCAAGAAGG CCGTCGGCAT CACCGCCGGC GCGTCCGCCC CGGAAGTCCT GGTCGACGAC
GTCATCGAGG CGCTGCGCCG GATCGTTCCG GTCAGCGTGT CGGTGCTGCC GGGCCGCGAG
GAGAACATCG AATTCGTCCT GCCCGCGGAG CTGGTCACCG CCTGA
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| Protein sequence | MSDVRPLEVF LAQPRGFCAG VVRAIEIVER ALEKYGPPVY VRHEIVHNKY VVESLKAKGA
IFVEELSEVP PKAVTVFSAH GVARSIEEEA ASRGLPVLNA TCPLVTKVHN QGKRYTAKGR
TLILIGHAGH PEVEGTMGQV PGPVLLVQNL DDVAALTLPS DTPVAYITQT TLSVDDTRDI
IAALSKRFSD IQGPDTRDIC YATQNRQSAV RAMSKLVDLI LVVGANNSSN SNRLREIGTE
AGIPSYLISD GSELNPDWLE GKKAVGITAG ASAPEVLVDD VIEALRRIVP VSVSVLPGRE
ENIEFVLPAE LVTA
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