| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1724 |
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| Symbol | |
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| ID | 3908249 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 1965434 |
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| End bp | 1966273 |
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| Gene Length | 840 bp |
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| Protein Length | 279 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637883618 |
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| Product | squalene/phytoene synthase |
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| Protein accession | YP_485343 |
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| Protein GI | 86748847 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | [TIGR03465] squalene synthase HpnD |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.949729 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0688647 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCTGC AATCCACCTC CGAACCCGCC GAGCATCAGG GCGCCGCGGT CGGCAGCTCG
TTCTACGCCG CGATGCGCAT CCTGCCGCGT CCGCAGCGCG AGGCGATGTT TCAGGTCTAC
AGCTTCTGCC GCTACGTCGA CGATATCGCC GATTCCGACG AGCCACGCGA CCTGCGGGCT
GCCGGTCTGC AGCGCTGGCG CGACGACATC GACGCGCTGT ATCGCGGCGC GCCGCCGCCG
CGGCTCGCGG ATTATCAGGG CTCTGTGCAA GCCTTCGGTC TGAAGCGCGA GGATTTCCTC
GCGATCATCG ACGGCATGGA GATGGACGTC ACCGCCGACA TCCGCGCGCC GGAAGACGCC
ACCCTCGATC TTTACTGCGA TCGCGTCGCC AGCGCGGTCG GGCGGCTGTC GGTGCGGATC
TTCGGCCTGC CCGAGCAGGA TGGCATCCTG CTCGCGCACC ATCTCGGCCG CGCGCTGCAG
CTCACCAACA TCCTGCGCGA CATCGACGAG GACGCCGGCC TCGGCCGGCT GTATCTGCCG
CGCGAAGGCC TGCTCGCCGC CGGCATCACC AGCGTCGATC CGGCGACTGT CGCCGCCGAT
CCGGCGGTTC CAAATGTCTG CGCGCCGCTG GTGGCGCGCG CGCTGAAGCA CTTCGACGCC
GCCGACGAGG TGATGAGCCG CAATCCGCGC CGCGTGGTCA AGGCGCCGCG GATCATGGGC
AAGTATTACT ATTCGATCCT TCAACTGCTG ATCGCGCGCG GCTTCGCGCC GCCGCGGACG
CCGGTCAAGC TCGGCAAGGC GGCGAAGATC GCCATCCTGC TACAATACGC GATCGTCTGA
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| Protein sequence | MTLQSTSEPA EHQGAAVGSS FYAAMRILPR PQREAMFQVY SFCRYVDDIA DSDEPRDLRA
AGLQRWRDDI DALYRGAPPP RLADYQGSVQ AFGLKREDFL AIIDGMEMDV TADIRAPEDA
TLDLYCDRVA SAVGRLSVRI FGLPEQDGIL LAHHLGRALQ LTNILRDIDE DAGLGRLYLP
REGLLAAGIT SVDPATVAAD PAVPNVCAPL VARALKHFDA ADEVMSRNPR RVVKAPRIMG
KYYYSILQLL IARGFAPPRT PVKLGKAAKI AILLQYAIV
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