| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1723 |
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| Symbol | |
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| ID | 3908248 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 1964559 |
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| End bp | 1965437 |
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| Gene Length | 879 bp |
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| Protein Length | 292 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637883617 |
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| Product | squalene/phytoene synthase |
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| Protein accession | YP_485342 |
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| Protein GI | 86748846 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1562] Phytoene/squalene synthetase |
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| TIGRFAM ID | [TIGR03464] squalene synthase HpnC |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0721768 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGTCTG CGAGTGAACT GCGATCCGGC AAGACCCACC GGGACGAGAA TTTTCCGGTC
GCGTCGTGGA TCATCCATCC GCGGCATCGC GAGCTGATTC TGGCGTTCTA CAATTTCGTC
CGCACCGCCG ACGACATCGC CGACCACGCG ATGCTCGACG CCGCGACCAA GCTCGACTAC
CTCGATCTGC TCGAGGCCGA ACTGCTCGGC CACGGGGCGA CCCAGCCGGA GGCGGTCGAA
CTGCGGCGCG CGCTGGCCGA GCGGGGCATG CCGCCGCGCC ACGCGCTGGA TGTGCTGATT
GCGTTTCGAA TGGACGTCAC CAAGCTGCGC TACGAGGATT GGGACGAGGT AATCCATTAT
TGCCGCTATT CGGCAATGCC GGTCGGCCGT TTCATGCTCG ACGTCCACGG CGAGAGCACC
TCGACCTGGC CGGCGTCGGA CGCGCTCTGC GCCGGGCTGC AGATCAACAA TCACCTGCAG
GATTGCGGCA AGGATTATCG CAACCTCAAC CGGGTCTACC TGCCGCGCGA CGCGCTGGAT
GCGGCTGGCG CCAAGGTCGA GGACCTCGGC CATCTGACGT CCTCGCCGGC GCTGCTGCGC
TGCCTGCAGG GGCTCGCCGT GCGCACCGAT GTGCTGCTCG GCGAGGGCCG CCCGCTCGCC
GCCGAGATCA AGGATTTCCG GCTCGGCCTC GAAGTCTCGG TGATCCAGGC CTTCGCCGAT
CGAATCGTGG CGATGCTCAA GGTGCGCGAC CCGCTGAGCG AGCGGGTGCA CCCGAAGCCG
ATCGAATTCC TGCTGTCCAC GATCGGCGCG GTCGGATCGG AAATCGCCCG TCGCACCTTT
GGAAAGGGGC CGGTCTCGAA GCCGGCGCCG CGCGCATGA
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| Protein sequence | MTSASELRSG KTHRDENFPV ASWIIHPRHR ELILAFYNFV RTADDIADHA MLDAATKLDY
LDLLEAELLG HGATQPEAVE LRRALAERGM PPRHALDVLI AFRMDVTKLR YEDWDEVIHY
CRYSAMPVGR FMLDVHGEST STWPASDALC AGLQINNHLQ DCGKDYRNLN RVYLPRDALD
AAGAKVEDLG HLTSSPALLR CLQGLAVRTD VLLGEGRPLA AEIKDFRLGL EVSVIQAFAD
RIVAMLKVRD PLSERVHPKP IEFLLSTIGA VGSEIARRTF GKGPVSKPAP RA
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