| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1712 |
|---|
| Symbol | |
|---|
| ID | 3908237 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 1947239 |
|---|
| End bp | 1950583 |
|---|
| Gene Length | 3345 bp |
|---|
| Protein Length | 1114 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637883606 |
|---|
| Product | transglutaminase-like |
|---|
| Protein accession | YP_485331 |
|---|
| Protein GI | 86748835 |
|---|
| COG category | [E] Amino acid transport and metabolism
[S] Function unknown |
|---|
| COG ID | [COG1305] Transglutaminase-like enzymes, putative cysteine proteases
[COG4196] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.347512 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGTCGATCT TCGTCGCCCT ACATCACGTC ACCCACTATA AATATGATCG CCCGGTCGAC
ATCGGCCCCC AGACCATTCG GCTCCGGCCT GCGCCGCACA CCCGAACGCC GATTCTGTCG
TATTCGCTGA AGGTGACGCC GGCGAACCAC TTCATCAATT GGCAACAGGA CCCGCAGGGC
AATTGGCTGG CGCGATTCGT GTTTCCGGAG AAGGCCAACG AGCTCAAGAT CGAGGTCGAT
TTCACCGCGG CGATGACGGT GATCAATCCG TTCGATTTTT TCGTCGAAAG CTACGCCGAG
ACCTTTCCGT TCGACTACAG CAATGACCTC ATGACCGAAC TCGCGCCGTA TCTGGCGACG
ACGGAGCCGG GGCCGCTGTT CAAGGACTAT CTCGCGAGCA TCCCGCGCGA GGCGGAGAGC
ACGGTCAATT TCCTGGTCGA TCTGAACGCG AAGCTGCGCG AGCGCATCCG CTACATCATC
CGGATGGAGC CCGGCGTGCA GACGCCGGAG GAAACGCTCG CCGCGGGCGC GGGCTCGTGC
CGCGATTCGG CGTGGCTGCT GATCCAGACG CTACGTCATA TCGGTCTCGC CGCACGCTTC
GTCTCCGGCT ATCTCGTGCA GTTGCGCCCC GACATCGATC CGGTCGAAGG GCCGCGCGAG
GTCGAGACCG ACTTCACCGA TCTGCACGCC TGGTGCGAGG TGTATCTGCC GGGCGCCGGC
TGGATCGGCT TCGACGTCAC CTCGGGAATG CTCGCCGGCG AGGGCCACAT CCCGGTCGCC
GCCACGCCGC ATTACCGGAC CGCGGCGCCG ATCTCGGGCG TGGTCGGCTT CGCCAATGTC
GATTTCAATT TCGAGATGAG CGTCAAACGC ATCCGCGAGG CGCCGCGGAT CACCAGGCCG
TTCTCGGACG AATCCTGGGC GCGGCTCGAT GCGCTGGGCG ACAAGGTCGA CGCCGATCTC
GTCGCCGGCG ACGTCCGGCT GACAATGGGC GGCGAGCCGA CCTTCGTCTC CATTGACGAC
ATGGAATCGC CGGAGTGGAA CGTCGCCGCG GTCGGCGGCG CCAAGCGCAT GCTCGCCGAC
GATCTGATCC GCCGGCTGCG GACGCGGTTC GCGCCGGGCG GCCTGCTGCA TTTCGGCCAG
GGCAAATGGT ATCCGGGCGA AAGCCTGCCG CGCTGGGCGT TCGGCCTGTA CTGGCGCAAG
GACGGATTGC CGATCTGGAA GAACGCCGAT CTGATCGCGC CGGTGTTCGG CCAGCGTCCG
GCGCGCGTGG AAGAAGCGGA GCAATTCGCG CTCGGCACCG CCAAGCGGCT CGGCATCGAC
ACCGATTACG TGTTGCCTGC GTTCGAGGAC CCGAGCCATT GGCTGCAGAA GGAAGCGACC
CTGCCGCCCA ACGTCGATCC GCTCGACAAC AAGCTCGCGG ACCCCGAAGA GCGCGCGCGG
ATGGCGCGGA TCTTCGATTC CGGCCTGACC ACGCCGAAGG GATTCGTGCT GCCGATTCAG
GCCTGGAACG CCGAAGTGCC GACGCCGAAG AAGCGCTGGC GCAGCGAGCG CTGGAAGCTG
CGTCGCGGCA ATCTGTTTTT GGTCCCCGGC GATTCACCGA TGGGCCTGCG GCTGCCGATC
GCGTCGCTGC CGCACATCCC CGAGGAGGAC TATCCGTTCG TCGTCGAGCG CGATCCGCTG
GACGAACGCG ACGCGCTGCC GAGCTATGTG GCGCCGGCCT ATGCGCCGCC GCCCGCCGCG
GAACTCGACC AGCTTCCGGT CTACGAGCAG GCGGCCGCAT CGCCCACGGC CCCACATCAA
AATGTCGAGG AGCAGAAGCT GCGCAAGGGC GGCGTCCGCA CCGCGATGTC GATCGAAATC
CGCGAGGGCG TGCTGTGCGC CTTCATGCCG CCCACCGAGA CCATCGAGGA CTATCTCGAA
TTGGTCGCGG CGGTGGAAGC GACCGCCGAG GAGATGCAGC TCCAGGTCCA CGTCGAAGGC
TATCCGCCGC CGTTCGATCC GCGTATCGAG GTCATCAAGG TGACGCCCGA TCCCGGCGTG
ATCGAAGTCA ACATCCACCC CGCCCGGAAC TGGCGCGAGG CGGTGCAGAC CACATTCGGC
CTGTATGAAG AGGCGGCCCG GGTGCGTCTC GGCGCCAACC GCTTCCTGAT CGACGGCCGC
CACACCGGCA CCGGCGGCGG CAATCATGTC GTGATCGGCG GCGCCAAGCC CGCGGACTCG
CCGTTCCTGC GACGGCCGGA TCTGCTGAAG AGCCTGGTGC TGTTCTGGCA GCGGCATCCG
TCGTTGTCCT ATCTATTCTC CGGCATGTTC ATCGGCCCGA CCAGCCAGGC GCCGCGGATC
GACGAGGCGC GGCACGATTC GCTCTACGAG CTGGAGATCG CGTTGGCGCA TGTGCCGCCG
CCCGGCGTCA AAGGCCCGCT GTGGCTGGTC GACCGGCTGT TCCGGCACAT TCTGGTCGAC
ATCACCGGCA ACACCCATCG CGCCGAATTG TGCATCGACA AGCTGTATTC GCCCGACAGC
CCGACCGGGC GCCTCGGTCT GGTCGAGTTT CGCGCGCTGG AGATGCCGCC CGATCCGCGA
ATGAGCCTGG CGCAGCAGCT TTTGATCCGC GCCCTGATCG CGATGCTGTG GAAGCAGCCG
CTCGACGGAA AATTCGTGCG CTGGGGCACC ACGTTGCACG ACCGCTTCAT GCTGCCGCAT
TTCCTGTGGG AGGATTTTCG CGACGTGCTG GCCGAGCTCG GCCGTGCCGG CTACGCCTTC
GAGCCGGAAT GGTTCACCGC GCAGCTCGAA TTCCGCTTTC CCGTCTTCGG CAGCGTCTAT
CACGGCGGCG TCACGCTGGA GCTGCGCCAG GCGCTGGAGC CGTGGCACGT GCTCGGCGAA
GAAGGCAGCG CCGGCGGCAC CGTGCGATAT GTCGACAGTT CGGTGGAGCG GCTGCAGGTC
AAGGCCGAGG GCTTCGTCGA GGGCCGCCAC GTCATCACCT GCAACGGCCG TCGGCTGCCG
ATGACGCCGA CCGCGCGCTC CGGCGAGGCG GTGGCGGCGG TGCGGTTCAA GGCCTGGCAG
CCGGCGTCGG GGCTGCACCC CACGATACCG GTGCATTCCC CGCTGGTGTT CGACATCGTC
GATACCTGGA ACGGCCGCTC GCTCGGCGGC TGCGTCTATC ACGTCGCTCA CCCCGGCGGG
CGGTCCTACG AGACCAAGCC GGTCAACTCC TACGAGGCCG AGGCGCGGCG GCTCGCGCGC
TTCCAGGATC ACGGTCACAC CCCCGGGCGG ATCGATCCGC CGCAGGAAGA ACGTTCATTT
GAATTCCCCC TGACCCTCGA CTTGCGCACG CCGCTGCTGC ATTGA
|
|---|
| Protein sequence | MSIFVALHHV THYKYDRPVD IGPQTIRLRP APHTRTPILS YSLKVTPANH FINWQQDPQG
NWLARFVFPE KANELKIEVD FTAAMTVINP FDFFVESYAE TFPFDYSNDL MTELAPYLAT
TEPGPLFKDY LASIPREAES TVNFLVDLNA KLRERIRYII RMEPGVQTPE ETLAAGAGSC
RDSAWLLIQT LRHIGLAARF VSGYLVQLRP DIDPVEGPRE VETDFTDLHA WCEVYLPGAG
WIGFDVTSGM LAGEGHIPVA ATPHYRTAAP ISGVVGFANV DFNFEMSVKR IREAPRITRP
FSDESWARLD ALGDKVDADL VAGDVRLTMG GEPTFVSIDD MESPEWNVAA VGGAKRMLAD
DLIRRLRTRF APGGLLHFGQ GKWYPGESLP RWAFGLYWRK DGLPIWKNAD LIAPVFGQRP
ARVEEAEQFA LGTAKRLGID TDYVLPAFED PSHWLQKEAT LPPNVDPLDN KLADPEERAR
MARIFDSGLT TPKGFVLPIQ AWNAEVPTPK KRWRSERWKL RRGNLFLVPG DSPMGLRLPI
ASLPHIPEED YPFVVERDPL DERDALPSYV APAYAPPPAA ELDQLPVYEQ AAASPTAPHQ
NVEEQKLRKG GVRTAMSIEI REGVLCAFMP PTETIEDYLE LVAAVEATAE EMQLQVHVEG
YPPPFDPRIE VIKVTPDPGV IEVNIHPARN WREAVQTTFG LYEEAARVRL GANRFLIDGR
HTGTGGGNHV VIGGAKPADS PFLRRPDLLK SLVLFWQRHP SLSYLFSGMF IGPTSQAPRI
DEARHDSLYE LEIALAHVPP PGVKGPLWLV DRLFRHILVD ITGNTHRAEL CIDKLYSPDS
PTGRLGLVEF RALEMPPDPR MSLAQQLLIR ALIAMLWKQP LDGKFVRWGT TLHDRFMLPH
FLWEDFRDVL AELGRAGYAF EPEWFTAQLE FRFPVFGSVY HGGVTLELRQ ALEPWHVLGE
EGSAGGTVRY VDSSVERLQV KAEGFVEGRH VITCNGRRLP MTPTARSGEA VAAVRFKAWQ
PASGLHPTIP VHSPLVFDIV DTWNGRSLGG CVYHVAHPGG RSYETKPVNS YEAEARRLAR
FQDHGHTPGR IDPPQEERSF EFPLTLDLRT PLLH
|
|---|
| |