| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1706 |
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| Symbol | |
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| ID | 3908231 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 1941346 |
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| End bp | 1942905 |
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| Gene Length | 1560 bp |
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| Protein Length | 519 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637883600 |
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| Product | 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase |
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| Protein accession | YP_485325 |
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| Protein GI | 86748829 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1012] NAD-dependent aldehyde dehydrogenases |
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| TIGRFAM ID | [TIGR02299] 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.447223 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.661157 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGATG CCGCTCCACC GAAGACCAAA GCCGATCCGG CCGCGGCATT TCAGGCCAAT
CTCGACCGCA CCGCGCCGCT GCTGAAGACG CTGAAAGCCG ACGGCATCGG CCACCTGATC
GACGGCGCGA TCGTGCCATC GTCGTCCGGC GAGGTTTTCG AGACGACCTC GCCGATCGAC
AATTGCGTGC TGGCGCAAGT GGCGCGCGGC ACCTCTGACG ACATCGACCG CGCGGCGCAG
GCAGCCAAGC GCGCGTTTCC GGCGTGGCGC GACATGGCGG CATCGGCGCG GCGCAAATTG
CTGCACAAGG TGGCGGACGC GATAGAAGCA CGCGCCGACG ACATCGCCGT GCTGGAATGC
ATCGACACCG GGCAAGCACA TCGCTTCATG GCCAAGGCCG CGATCCGCGC CGCCGAGAAT
TTCCGGTTCT TCGCCGACAA ATGCGCCGAG GCGCGCGACG GGCTGAACAC GCCGAGCGAC
GAGCACTGGA ACGTTTCGAC CCGGGTGCCG ATCGGCCCGG TCGGCGTGAT CACGCCGTGG
AATACGCCGT TCATGCTGTC GACCTGGAAG ATCGCGCCGG CGCTGGCCGC CGGCTGCACC
GTCGTGCACA AGCCCGCCGA GTGGTCGCCG GTGACCGCGG ATCTGCTGTC GCGAATCTGC
AAGGACGCCG GCCTGCCCGA CGGCGTGCTC AACACCGTGC AGGGCTTCGG CGAAGAAGCA
GGCAAGGCGC TGACCGAACA TCCGGCGATC AAGGCGATCG CCTTCGTCGG CGAGACCGCC
ACGGGTGCGG CGATCATGGC GCAGGGCGCG CCGACGCTGA AGCGGGTGCA TTTCGAACTC
GGCGGCAAGA ACCCGGTGAT CGTGTTCGAC GACGCCGATC TCGACCGCGC GCTCGACGCC
GTGGTGTTCA TGATCTACTC GCTCAACGGC GAGCGCTGCA CCTCGTCCAG CCGGCTGCTG
ATCCAGCAAT CGATCGCCGA CGCCTTCATC GACAAGCTCG CGGCCCGCGT CCGGGCGCTC
AAGGTCGGCC ATCCGCTCGA TCCGGCCACC GAAGTCGGCC CGCTGATCCA TCAGCGCCAT
CTCGACAAGG TGTGCTCCTA TTTCGACATT GCGAAGAACG AAGGTGCGAC CGTCGCCGTC
GGTGGCGCGC GCCACGATGG CCCCGGCGGC GGCAACTACG TTCAGCCAAC GCTGGTGACC
GGCGCGCGCA GTAACATGCG GGTCGCGCAA GACGAAGTGT TCGGCCCGTT TCTCACGGTG
ATCCCGTTCA AGGACGAGGC CGACGCGATC GCGATCGCCA ACGACATCCG CTACGGCCTC
ACCGGCTATA TCTGGACCGG CGATATGGGC CGCGCGCTGC GCGTCGCCGA CGCGCTCGAG
GCCGGCATGA TCTGGCTGAA CTCCGAAAAC GTTCGGCATC TGCCGACCCC GTTCGGCGGC
ATGAAGCAAT CCGGCATCGG CCGCGACGGC GGCGACTATT CGTTCGAGTT CTACATGGAA
ACCAAGCACG TCTCGCTGGC CCGCGGCACG CACAAGATTC AGAGACTGGG GGTTATGTAG
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| Protein sequence | MADAAPPKTK ADPAAAFQAN LDRTAPLLKT LKADGIGHLI DGAIVPSSSG EVFETTSPID
NCVLAQVARG TSDDIDRAAQ AAKRAFPAWR DMAASARRKL LHKVADAIEA RADDIAVLEC
IDTGQAHRFM AKAAIRAAEN FRFFADKCAE ARDGLNTPSD EHWNVSTRVP IGPVGVITPW
NTPFMLSTWK IAPALAAGCT VVHKPAEWSP VTADLLSRIC KDAGLPDGVL NTVQGFGEEA
GKALTEHPAI KAIAFVGETA TGAAIMAQGA PTLKRVHFEL GGKNPVIVFD DADLDRALDA
VVFMIYSLNG ERCTSSSRLL IQQSIADAFI DKLAARVRAL KVGHPLDPAT EVGPLIHQRH
LDKVCSYFDI AKNEGATVAV GGARHDGPGG GNYVQPTLVT GARSNMRVAQ DEVFGPFLTV
IPFKDEADAI AIANDIRYGL TGYIWTGDMG RALRVADALE AGMIWLNSEN VRHLPTPFGG
MKQSGIGRDG GDYSFEFYME TKHVSLARGT HKIQRLGVM
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