| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1640 |
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| Symbol | |
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| ID | 3909917 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 1869479 |
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| End bp | 1870816 |
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| Gene Length | 1338 bp |
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| Protein Length | 445 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 637883534 |
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| Product | Type I secretion membrane fusion protein, HlyD |
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| Protein accession | YP_485259 |
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| Protein GI | 86748763 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.893315 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAATCCG CTCAATCGGA AGATCTCGCC GTCCAATTGA AGTCTCAGTT GCGGCCTGTG
GTGTGGGGCG CGACCGTCGT GATCGGGGTG TTTCTGTTCG CGATGACCGC CTGGAGCGTC
GGCGCGCCGA TGTCGAGCGC CGCGATCGCG TCGGGGGTCG TGAGCCCCGA TGGTAGCCGC
AAGACGCTCC AGCATCTCGA AGGCGGCATT GTCCGCGAAT TGCTGGTGCG CGAGGGCGAT
CACGTTCAGG CCGGGCAAGT CCTGATGCGT CTGGACCTGA CGCAGGCGAG GGCGAATTTC
ACCGCAAAGC GCGACGAATG GCTCCGGCTG CAGGCGATCA GGGCCCGCTA CGAATCGCAC
GGGCTCAATC TCGAAGAGAT GCGAATCCCG CAGGTGCTTC TCGACGACAA GAGCGAAGAA
TTCACGGCCT TCATCGAGAA CGAAAAGAAG CTGTTCGAAG GCCGCCGGCT GGAAGTGATC
GCGCGAGAGG ACATCTACAA TCAGCAGATC AAGCAGATCG AAGCCGAAAT CAACGGGAAG
CATCTCGAGC GGGAAGGCCT CGACAAGATG CGAGGCTTCA TCAATGAGGA GATCGGCGAC
AAGAGCGGGC TGCTGTTGCA GAACCTGGTG CGCAAGCCAG AGGTCTTGGC GCTGCAACGC
ACCGAGGCGG AACTGACCTC CAAGATCGGG GTCAATCTGT CCGACATCGG GCGTGCGGAG
CAGAAGATCA AAGAGGTGCT GCTCGCCATG CGCGCCGTTC AAACCAAGTT CCGCGACGAG
AATTCGGAAC AGTTGATGAA GGTGACCCGC GACATTGCCC AGATAGAAGG ATCGCTGACG
AATACCGGCG ACATTCTCAG CCGGACCGAC CTGATAGCGC CGGTGTCCGG AACGGTCTTG
CAGTTGCGCT TCAAGACCGT AGGCGGTGTC GTCAAGGCCG GCGACCAGAT TCTCGACATC
GTGCCCGATG ACGATGTGCT GGTGATCGAT GCGAAACTCT CACCCACGGA CATCGATGTG
GTGCGGGTGG GCATGCCGGC TCAGGTTCAC TTTGATGCCT ATGTCTCGCG TCGGACGCCG
ATGTTCGAAG GTGTCGTCAA TCACGTGAGC TCGGACGCCA TCGTCGATCA GGCGGCAGCG
AACGCGCTGC AGCAGCGCTA CTACCAGGTA AAGGTGCAAA TCGACCGGAA GCAGATCGAT
CAGTACAAGC ACATCACGCT GGTGCCCGGC ATGCCCGCGG AAGCGTTCAT CATGACCGGA
ACGCGGACTT TGTTCGAATA CCTGACTGCG CCGATCCTCA CGTCGTTCCG AAGGGCATTC
CGCGAGGACT ACAATTGA
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| Protein sequence | MQSAQSEDLA VQLKSQLRPV VWGATVVIGV FLFAMTAWSV GAPMSSAAIA SGVVSPDGSR
KTLQHLEGGI VRELLVREGD HVQAGQVLMR LDLTQARANF TAKRDEWLRL QAIRARYESH
GLNLEEMRIP QVLLDDKSEE FTAFIENEKK LFEGRRLEVI AREDIYNQQI KQIEAEINGK
HLEREGLDKM RGFINEEIGD KSGLLLQNLV RKPEVLALQR TEAELTSKIG VNLSDIGRAE
QKIKEVLLAM RAVQTKFRDE NSEQLMKVTR DIAQIEGSLT NTGDILSRTD LIAPVSGTVL
QLRFKTVGGV VKAGDQILDI VPDDDVLVID AKLSPTDIDV VRVGMPAQVH FDAYVSRRTP
MFEGVVNHVS SDAIVDQAAA NALQQRYYQV KVQIDRKQID QYKHITLVPG MPAEAFIMTG
TRTLFEYLTA PILTSFRRAF REDYN
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