| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1639 |
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| Symbol | |
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| ID | 3909916 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 1867716 |
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| End bp | 1869464 |
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| Gene Length | 1749 bp |
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| Protein Length | 582 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637883533 |
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| Product | Type I secretion system ATPase, PrtD |
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| Protein accession | YP_485258 |
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| Protein GI | 86748762 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.60166 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAATCCC CGGCCGTTGT GACCGCGCGA ACATTGCTCC GCCAGTGCGG ATATGGCGCA
AAGTATGTTT TCATCACCAG CCTGTTCATC AACGTGCTGG TGCTGACCTC GCCGCTCTAC
ATGCAGCAGG TGTTCGACCG CGTGGTGCAG ACCCAGCACT ACGCCACACT GGTCTATCTG
ACGCTGATTT CGGTTTTCGC GCTGGCGGTG ATGGGGGCGC TGGATGCGCT GCGCGGCATC
GGGCTGTCGC GGCTCGGCCG CTGGATCGAC GACTCGCTGC GGTCCGAGGT GATGTACACG
GCGCTCCACC ACGCCCGCAC CGAGGGCCGC CTCAACAGCC AGGTGATCGG CGATCTCGCT
ACGCTGAGGG GGTTTGCCGG CGGCCAGCAG ATCGTGCCGT TCTTCGACGC GGTGTGGATG
CCGATGTTCC TGTTGCTGAT GTTCGTCCTG CATCCCTGGC TGGGGGTGAT CGGTTTGTTT
TCCGCGGTGC TGCTGTTCGG GCTGGCGGTG TGGAATGATA TCGGCATGCG GCATCGGCTG
GCCGGTCTGT CCGCCGCGCA GGCCAAATTG TCGGCATTTT CGTCGACCGC TTTGCGCAGC
GCCGACGTGA TCCACGGCAT GGGCATGTTC GACGCCGTGA TGAAGCGCTA CAAGACCGAC
GCGGTCGAGA TCGCGGAGAA ATCCCAGGCG GCGAACGATT TCGGCGCCAA ACTCGGCGGT
CTGTCGAAGT TCGTGCGGAT CACCGTGCAG GTCGCGGTGC TGTGCGTCGG CGCGTTGCTC
GTCATCAACA GCGAGATGAC CAGCGGCGCG ATGATCGCAG CCTCGATCAT CTTGGGGCGG
GCGCTGGCGC CTGTGGAGCA GTCGATGGCG TCGTGGCGCT CGTTCATCGC CGCGCGAGAA
TCCTATCGGC GGATCAACGA CCTGATCACC AAGGCCGAGG CGCGCTCGGT TGCGACCGCA
AGATTGCCGG AGCCGAAGGG CGTCGTGAGC ATCGAGAACC TATCGTTCAA GTTCGGCGGC
ACCGACCGTC CGGTGCTGAA GAACGTCAAT CTGACCGTGC CGGCGGGATC GGTGCTGGCG
CTGGTCGGTC CTTCCGCCAG CGGCAAGAGC ACCCTGTGCA AGATGATCGT GGGGTCGTGG
TTGCCGGGTG GCGGTTCGGT GCGGCTCGAT GGTGCGCAGA TTCAGCACAT CGATCGCAAC
CAGGTTTCGG AATGGATCGG CTATCTCCCG CAATCGATCG AACTGTTCAA CGGCTCGGTG
CACGACAACA TCGCCCGGTT CAAGGAGGCC GGCGATGACG CCGTGGTCGC TGCCGCCAAC
CTCGCCGGCT GCCATGAACT GATCCTGCGG CTTCCCGACG GCTACGCCAG CGAGCTCGGC
GAGAGCGCCG GCAATCTGAG CGGGGGGCAG AAGCAGCGGA TCGCGCTGGC GCGCGCGGTG
TTCGGCAATC CCAAACTCGT GGTCCTCGAC GAGCCGAATT CAAATCTCGA TTCCGAGGGC
GAGGCGGCTC TGGTCGCCGC GGTCGTCGCG CTGAAGAAGC AGGGAGCGAC GGTCATCCTC
GTCAGTCATC GCCTGTCGAT CCTGTCACCG GTCGATTTCA TCGCGGTGAT GCGGGACGGC
ACCATCGAAA TGGCCGGCGA GCGGGAAGAG GTGTTGCGCG AACTCTCCAG CCGCGCCGCG
CGCAGCGGAA ACGATCAAAC CATGCCGGTG CCGGCCCGCG CGTCGGGTGC CGCGCCGGCT
CACCAGTGA
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| Protein sequence | MQSPAVVTAR TLLRQCGYGA KYVFITSLFI NVLVLTSPLY MQQVFDRVVQ TQHYATLVYL
TLISVFALAV MGALDALRGI GLSRLGRWID DSLRSEVMYT ALHHARTEGR LNSQVIGDLA
TLRGFAGGQQ IVPFFDAVWM PMFLLLMFVL HPWLGVIGLF SAVLLFGLAV WNDIGMRHRL
AGLSAAQAKL SAFSSTALRS ADVIHGMGMF DAVMKRYKTD AVEIAEKSQA ANDFGAKLGG
LSKFVRITVQ VAVLCVGALL VINSEMTSGA MIAASIILGR ALAPVEQSMA SWRSFIAARE
SYRRINDLIT KAEARSVATA RLPEPKGVVS IENLSFKFGG TDRPVLKNVN LTVPAGSVLA
LVGPSASGKS TLCKMIVGSW LPGGGSVRLD GAQIQHIDRN QVSEWIGYLP QSIELFNGSV
HDNIARFKEA GDDAVVAAAN LAGCHELILR LPDGYASELG ESAGNLSGGQ KQRIALARAV
FGNPKLVVLD EPNSNLDSEG EAALVAAVVA LKKQGATVIL VSHRLSILSP VDFIAVMRDG
TIEMAGEREE VLRELSSRAA RSGNDQTMPV PARASGAAPA HQ
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