| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1633 |
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| Symbol | |
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| ID | 3909910 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 1839424 |
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| End bp | 1840983 |
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| Gene Length | 1560 bp |
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| Protein Length | 519 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637883527 |
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| Product | Type I secretion outer membrane protein, TolC |
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| Protein accession | YP_485252 |
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| Protein GI | 86748756 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.181955 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.716054 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCTTGGA ATGTTCGCAC TTTTGCTGCC GTAGCATTGA TCGCCCTCGG AGCCGACCCT
GCCGGGGCTG CCGAGCCATT CACGATTTTA GATGCGATCA ATCAGGCGGT TAAGACCAAT
CCCGGGGTGG GGGAAGCCGC TGCCAACCGG CGCGCGACCG AGGCCGAACT GCGCCAGACG
CAAGGCACGT TGCTCCCCCA GGTTCGCCTG CAGGCCAGCG CGGGACCTGA GAAGCTGCGG
CAATACGATG TGGCAACTCC GAACAACGAC GAGTACCTAC GCGGGCGCCA AGGATCCGTC
GTGGTTCGTC AGTTGCTGTT CGATGGCTTC GCATCGATCA ACGAGGTTTG GCGGCAGGCG
GCCCGCGTCG ACGCAGCGGC TTTCCGGGTG CTGGAGCGCA CCGAGCTGAT CGGTCTCGAC
GCCGCAGAGG CCTACATCGA TATGGTGCGC TACACCAAAT TGGTGGCGCT CGCTCAGCAG
AACCTCAAAG TACATCTCGA ATTGCGTAAG AACGTCCTTG CCCGCTTCCA AGGCGGTCGA
GCCGGGGAGG GTGACACCCA GCAGGCAGAA GAGCGGGTTG CAGCTGCGGA AGCCGTCGCT
GCGGAGTTTC GCCTCAGCCT GGACTCTGCA CGCGCGAAGT ATCGCAAGGT CGTCGGGCTC
GAGCCCTACA ATCTGCGCTT CCCGGGCCGA CTGTCGGATC TGCCGCAGAC CAAAGAGGAA
TCGCTCGAGG TCGCCTACAA GTTCAATCCG ACCATTCGAG CCGCTGGTGC CGACGTGGTA
GCCGCCAACC GCGCTTTTGA CGCCACCACG GGCGCATTCC TTCCGACGCT CGCGCTGGAA
GGTCGCGCCA CGCGTGGCAA GGAAACGATC CTGTACAACA ACCAGTACGA CGAAGTCAGC
GGCAAGCTGG TGATGTCCTG GGACATCTTC AACGGTGGCC AGAGCAGCTG GAGGCGCAAC
GAAGCCGCCG AGCGGATGAT CCAGGAACAG CAGAAGCTCG CGAGGTTACA GCGCGACGCT
CTCGAATCGC TGGATAAGGC CTGGGCGGCG CGAACCATCA CGAACGACCG AGCTGCGGCC
CTGGTCCGCG ATGTCGAGGC CGCCCGCCGG ACCTTCGCGG CCTATACCAA GGAGTATGAA
CTCGGTCAGC GCACGCTGGT CGATCTGCTG AATTCGCAGA ACCAGTACTT CAACGCCAGT
GTTTCGCTGG TCTCCGCGCG CGGCGTTGCG GTTTTTGCGG ACTATCAATT GCTGGCGACG
ATGGGGCAGC TGCTTGAATA TCTCAAGACT GGTCATCCGC CGGAGATCCA ACTGGTCGAC
GTTCACCCGA GCGGATTTAT CGGTTTCGCT CTGGCGCCGG TGCGTCTTCG TCCGCCCGGC
CCTGGTCCGG AGCCCGTGAA TGCGGCGGGA CCGGTGAGAT ATTTCGAATC ACCCTTTGAA
ACCGCCAAGC TGCCTCGGGT GATCTCATTC GATGACCGCT GGGCATCGGG GCATGCCACC
AATGCCAACG CTTCTGCGAT ATTCCCCGGA CCCTATGCGG CCGCAGGAGC GAGGTATTGA
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| Protein sequence | MPWNVRTFAA VALIALGADP AGAAEPFTIL DAINQAVKTN PGVGEAAANR RATEAELRQT
QGTLLPQVRL QASAGPEKLR QYDVATPNND EYLRGRQGSV VVRQLLFDGF ASINEVWRQA
ARVDAAAFRV LERTELIGLD AAEAYIDMVR YTKLVALAQQ NLKVHLELRK NVLARFQGGR
AGEGDTQQAE ERVAAAEAVA AEFRLSLDSA RAKYRKVVGL EPYNLRFPGR LSDLPQTKEE
SLEVAYKFNP TIRAAGADVV AANRAFDATT GAFLPTLALE GRATRGKETI LYNNQYDEVS
GKLVMSWDIF NGGQSSWRRN EAAERMIQEQ QKLARLQRDA LESLDKAWAA RTITNDRAAA
LVRDVEAARR TFAAYTKEYE LGQRTLVDLL NSQNQYFNAS VSLVSARGVA VFADYQLLAT
MGQLLEYLKT GHPPEIQLVD VHPSGFIGFA LAPVRLRPPG PGPEPVNAAG PVRYFESPFE
TAKLPRVISF DDRWASGHAT NANASAIFPG PYAAAGARY
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