| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1624 |
|---|
| Symbol | |
|---|
| ID | 3909901 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 1829803 |
|---|
| End bp | 1831314 |
|---|
| Gene Length | 1512 bp |
|---|
| Protein Length | 503 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637883519 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_485244 |
|---|
| Protein GI | 86748748 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.552024 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.642383 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGACGCGCA GCGATTTGCG CAATGAGTCC CTGATGGCCG AAGAAGCATT CGCACTGTCG
CCGATCTCCG CACGCCCGGC GATGCCGAAC GACGCGGACT ACGATGCGAT CCGCGAAGCC
TTCATGGAAA CCTCGCGGGG ACGCTGGTTT CTCAGCGAAT ACGCCAAGCG CAACCGCAAC
GCCGACACCC GCATGGTGCT GGATGCGGTG GCGCGGATCG AGCAGAATCT CGCCGCGCAG
AAGCAGGCCG GCGGCCCGTC CTTCGGCGAA TCACTCGTCG CGATCCGGGC GATCGTCGGC
GAGGCGCGCG CCGGCGTCGC CCGGGCGATC GCCGGACTGG AGAACGAGGC GGTGCTGGCA
GCGGCGCGTG ACGGCGCGCG CATCATCCGC GAGGTGTCGT GGACGCTGCG CGAATGCGGC
GCCGATATCC GGATCTGCAA TCTGATCGAC ACCCAGGTGA CGGCGATCGA CGCCGGCCAC
CGGCTGGTCG AGGACATCGA CACAGCGGCG GTGACGGCGG CGTTCGACGG CCTGCTCGAC
CGCCTGCACG ACCTCGCAGG GGTCGCGCGC GAGGCCCGTG ACGATGCTCG GCCCGCCGAC
CGGGACGAGA TGGTGGCCCC CAGCGCCGAC GGCGACATGG CGGAAGCCGC AGCGCCGCCA
CAGACCGAAG CGGTCGTGAC CGAGCCGGCG TTGGAGACCC ATCCGCAGCT GGTCGCGACC
GAGCCGGCCG CGCCGGAGGC GGAGGCCGAG GCCGGCGTGA CGATCGTGGC TGCGGCGGAG
ACCGACGGAG TCGAATTCGT AGAGCCATGG GACCAGCCGC CGGCGGACGA CGTCGAGGCG
GCGGTTGCGG TCGATCAGAC TCCGGACGAT CAGGCCTCGT TTCATCAGTC CCCGGTCGCT
GTGCCCCCCG TCGCCCTTAA TTCGACCGAT CAGCCTCAGG CTGCCGAGCC GGCCGATGAA
CCGGCCGCCG ATGTCGACGC GATGCTGGAT CTGGTCGCGA TGGAGATGTC GGCGCCGCAG
CCGCCCGAGC CCGGCGAACT CGAAGCCGCG ATCGCCGCCG CGCAGGCCGA GGCCGAACAG
ACGGTGGACG CCAGCCCGGC AGCCGGCGAA CACTCCGAGC TCGAGACGAT CGCTGCCGCG
GTGGCGCTGC CGCACGCGGC CCCCGACGCC GATCTGCCCG CGGCAGCCGA AGCGCCGTCG
AGCGACACCG CCCCGATCGA AGCCCCGTCG ATCGACCTGT CGAGCCTCGA GATCGGCGAG
CGCGGCGAGC TCCTCGATAC GCCGCGGCAG ATGACAGAAG CGATGATGGC GGCGCCCGCA
ACGACTCACG CGGTCGCGCC CGCGCCAATG ATGGCTGCGA GCGCCGGGCC CGCGGCTGCA
GCGGCATCGC CGTCGCTCGG CGCTGCTCTG CTTGCGAGCG GCGTTGTCGG CCAGCCTGTG
CAGTCCCACA GCGATGCGCT GGCGCCGCTG CGACGGATGA GCCAGGCCGA GAAGATCGCC
TTCTTCTCCT GA
|
|---|
| Protein sequence | MTRSDLRNES LMAEEAFALS PISARPAMPN DADYDAIREA FMETSRGRWF LSEYAKRNRN
ADTRMVLDAV ARIEQNLAAQ KQAGGPSFGE SLVAIRAIVG EARAGVARAI AGLENEAVLA
AARDGARIIR EVSWTLRECG ADIRICNLID TQVTAIDAGH RLVEDIDTAA VTAAFDGLLD
RLHDLAGVAR EARDDARPAD RDEMVAPSAD GDMAEAAAPP QTEAVVTEPA LETHPQLVAT
EPAAPEAEAE AGVTIVAAAE TDGVEFVEPW DQPPADDVEA AVAVDQTPDD QASFHQSPVA
VPPVALNSTD QPQAAEPADE PAADVDAMLD LVAMEMSAPQ PPEPGELEAA IAAAQAEAEQ
TVDASPAAGE HSELETIAAA VALPHAAPDA DLPAAAEAPS SDTAPIEAPS IDLSSLEIGE
RGELLDTPRQ MTEAMMAAPA TTHAVAPAPM MAASAGPAAA AASPSLGAAL LASGVVGQPV
QSHSDALAPL RRMSQAEKIA FFS
|
|---|
| |