| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1623 |
|---|
| Symbol | |
|---|
| ID | 3909900 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 1828537 |
|---|
| End bp | 1829523 |
|---|
| Gene Length | 987 bp |
|---|
| Protein Length | 328 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637883518 |
|---|
| Product | pyridoxal-5'-phosphate-dependent enzyme, beta subunit |
|---|
| Protein accession | YP_485243 |
|---|
| Protein GI | 86748747 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1171] Threonine dehydratase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGGATT CAGTCTCGTT CCCGATCACC GCCGCAGATA TCGACGCGGC GGCCGATGTG
CTCGCGCCCT ATGCGGTGCG CACGCCGCTG CTGACCTCGC CGGCGCTCGA CGCCGCCACC
GGGGCGCGCG TCTTTCTGAA GCCGGAGATG CTGCAGCGGA CCGGCTCGTT CAAATTTCGC
GGCGCCTTCA ACAAGCTGTC GTCGATCCCG CAAGCGGCGC GCGGCGGCGG CGTGGTGGCG
TTCTCGTCCG GCAATCACGC CCAGGGCGTC GCCGCGGCGG CGCAGATCCT CGGCATGCGC
GCCACCATCG TGATGCCGGC CGATGCGCCG GCCTCGAAGC GTGAGCGCAC CAAGGGCTAC
GGCGCCGAGG TGGTGCTGTA CGATCGCGAC CGCGAGGATC GCGAGGCGAT CGCGCGCGGC
ATCGCCGGCC CCCGCGGCGC GACGCTGGTG CCGCCTTATG ACGATGCCAA GGTGATCGCG
GGGCAGGGCA CCGTCGGCCG CGAGATTGCC GCCGATCTCG CCGCGCTCGG CGTCACGCCG
GATATCGTCG TCGCGCCGGC CTCCGGCGGC GGGCTGGTCG CCGGCATTGC CGTCGCGGTG
ACGACGCGCT TCCCGGAAGC GGCGGTGATG TCGGCGGAGC CGGAGGCGTT CGACGACCAT
GCCCGCTCCA TCGCCGCCGG CCGCCGTGAG CCGCACAAGG CCGAAGGCCG CACCATCTGC
GACGCGCTGA TGGCGTCGAT CCCAGGCGAA CTCACCTTCG CGATCAATCA GCAGCTTCTG
ACGCGCGGCG TCACCGCCTC CGATGCCGAG GTGACCAAGG CGGTGGCCTT GGTGTTTCGC
GAGCTGAAGC TGGTGGTCGA GCCCGGCGGC GCGGTGGCGC TGGCGGCACT GCTGGCAGGC
CGCATCGATG CGCGCGGCAA GACCATCGCG ATCGTACTGT CGGGCGGCAA TGTCGACGCC
GATCTGTTCG CGAAGCTGAT CGCTTAG
|
|---|
| Protein sequence | MMDSVSFPIT AADIDAAADV LAPYAVRTPL LTSPALDAAT GARVFLKPEM LQRTGSFKFR
GAFNKLSSIP QAARGGGVVA FSSGNHAQGV AAAAQILGMR ATIVMPADAP ASKRERTKGY
GAEVVLYDRD REDREAIARG IAGPRGATLV PPYDDAKVIA GQGTVGREIA ADLAALGVTP
DIVVAPASGG GLVAGIAVAV TTRFPEAAVM SAEPEAFDDH ARSIAAGRRE PHKAEGRTIC
DALMASIPGE LTFAINQQLL TRGVTASDAE VTKAVALVFR ELKLVVEPGG AVALAALLAG
RIDARGKTIA IVLSGGNVDA DLFAKLIA
|
|---|
| |