| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1602 |
|---|
| Symbol | |
|---|
| ID | 3910073 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 1805262 |
|---|
| End bp | 1806242 |
|---|
| Gene Length | 981 bp |
|---|
| Protein Length | 326 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637883498 |
|---|
| Product | ADP-L-glycero-D-manno-heptose-6-epimerase |
|---|
| Protein accession | YP_485223 |
|---|
| Protein GI | 86748727 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0451] Nucleoside-diphosphate-sugar epimerases |
|---|
| TIGRFAM ID | [TIGR02197] ADP-L-glycero-D-manno-heptose-6-epimerase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCTGG TAACCGGAGG CGCCGGCTTT ATCGGATCGA ACATCGCTGC GGCGCTGAAC
GATGCGGGGC GCAGTGATGT GGCGGTGTGC GACTTTCTCG GCCACGAGGG CAAATGGAAG
AACCTCGCCA AGCGCCAGCT CGCCGATGTC GTGCCGCCCG CCGAACTCTC GGAATGGCTG
AGGGGTCGCC GGCTCGACGC GGTGTTTCAC ATGGGCGCGA TCTCGGAAAC GACCGCGACC
GATGGCGATC TGGTGATCGA CACCAACTTC CGGTTGTCGA TGCGGCTGCT CGACTGGTGC
ACTGAAAACC GGGTGCCGTT CATCTATGCC TCCTCCGCCG CCACCTATGG CGACGGCGCG
CAGGGCTTCA GCGATGATCC ATCGCTCGCC GCGCTGAAGC AATTGCGGCC GATGAATCTC
TACGGCTGGA GCAAGCACCT GTTCGATCTC GTGGTGGCCG AGCGCGCCGC ACGCGGCGAG
CGGCTGCCGC CGCAATGGGC CGGGTTGAAG TTCTTCAACG TGTTCGGCCC CAACGAGTAT
CACAAGGGGA CGATGGCGAG CGTGCTGGCG CGGCGCTTCG ACGACATCAG GGCCGGGCGC
GTGGTGCAGC TGTTCAAGTC GCATCGCGAC GGCATCGCCG ATGGCGACCA GCGCCGCGAT
TTCATCTATG TCGACGACGT GGTCCGGGTG ATGATGTGGC TGTTCGCGAC GCCGTCGGTG
AGCGGCCTGT TCAATGTCGG CACCAGCCAC GCCCGCAGTT TCCGGGATCT GATCCTCGCC
GCCTATTCGG CGCTCGGAAC CCCGCCGCAA ATCGACTACA TCGACATGCC GGAACAGATT
CGCGGCAGCT ATCAGTATTT CACCGAGAGC GAAGGCGACC GGTTGCGCGC CGCAGGCTAC
AATGGCGGCT TCACGCCGCT CGAAGATGCG GTCGCTTGCT ATGTCAGGGG GTACCTTGAC
GGCAGTGATC GCTTCCGCTG A
|
|---|
| Protein sequence | MLLVTGGAGF IGSNIAAALN DAGRSDVAVC DFLGHEGKWK NLAKRQLADV VPPAELSEWL
RGRRLDAVFH MGAISETTAT DGDLVIDTNF RLSMRLLDWC TENRVPFIYA SSAATYGDGA
QGFSDDPSLA ALKQLRPMNL YGWSKHLFDL VVAERAARGE RLPPQWAGLK FFNVFGPNEY
HKGTMASVLA RRFDDIRAGR VVQLFKSHRD GIADGDQRRD FIYVDDVVRV MMWLFATPSV
SGLFNVGTSH ARSFRDLILA AYSALGTPPQ IDYIDMPEQI RGSYQYFTES EGDRLRAAGY
NGGFTPLEDA VACYVRGYLD GSDRFR
|
|---|
| |