| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1590 |
|---|
| Symbol | |
|---|
| ID | 3910061 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 1792089 |
|---|
| End bp | 1794593 |
|---|
| Gene Length | 2505 bp |
|---|
| Protein Length | 834 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 637883486 |
|---|
| Product | AAA_5 ATPase |
|---|
| Protein accession | YP_485211 |
|---|
| Protein GI | 86748715 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1401] GTPase subunit of restriction endonuclease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.85228 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGGGCAG AGGATTTCAA AGCTTGGCTT GAAGCTGGGG GCGCACTTAC AGAAGGTGGA
CGCAACACGC GAGCTAATGC CGTAGCCACG ATCGAGAGAA ATCTCGCTGC CTTGGGGTCG
CCCAATGCTG ATCTCGAAGA AGCATGGAAC TCCGATCGAT TTGAGCATCT GCGTCGCAGA
CTGAAAGAAC TGCGCGAGGA ACTCGCGGCG GGCGGGACGC AATATCACGT CCTAATGCCC
CAGTCGGAAA ATCCTGAAAA ACGACTATCA AGCTGGCGCG CTTGGCTCGG CCAATATGGC
CGCTTCTTGA GCGGCGAAAT ACGTGAGCAT CGTGATGCTG ATCGGATTCG CCGACACGTA
CTTGAGAACT ACATCGAGCC GGCCAGGGAA CGCGATGAAG AAACGGTGGA TGTCCTAGTT
CGGAGGGTCA ATGACGTACT AGGCCTAAAT GAAGCATGGC CTAATATCTG CCAAGCCCTC
CAAGGCAAGA AATTTCGGGA ACTGGCCGAC TTAGAGGCGC CTGAACAAAT CGGTGCGGAC
CAGAGCCCGG CGACGATCTT CCGATTTCAC TTGGATGAAA CTTTCAGGGC TGACGACAAT
CTCAACTATG CTCGACTGTT TGTCTTATAT GATGCCGAGG GAGCTGCGTT CGAGCCGGTT
AAGAACAGAA ATCGCGAAAC AAATCGCCTA GCGTACCGCA TCAAGCCGCG AGGCTCGGGC
AACGAGGCGC GCGATGCGGT CGAAGTCGAT ACGCTCCAGC AGGTTGCGCG TGCAATGCTC
GTTGACCACC TTGCTGCACG TGTCAAATCC ACTCGCGGCG GCGCTGCTAA TTATGCCGTC
TACGGAAAAG AAAAGATAGT ACGTTACGAA CTTGATCCGA GCATTGCATT GGAAATAGGG
GTTCCTCCGA ATGGCGAGAT TGGTCAGAGC AATGATCCCA GCAGCAATCA AGCCCCGCAA
CTTCCAAGCG ATAAAGAGGA TGGGCTTTTG GAGCAGCCTC ACGCAACAAA CTTAATTCTC
TACGGACCTC CCGGCACAGG AAAGACCTTC ACGACCGCAT TAGAGGCGCT CAAGCTTTGC
GGTGAACCTG TTCCCGACAG TCGAGAGCAC CTAATGGAAG CCTATCGTCG CCTGTCGGAT
GCTGGTCGTA TCGAATTCGT CACGTTCCAT CAATCAATCT CCTACGAAGA CTTTGTCGAA
GGGCTGAGGC CAACGCAGTC AGGCGAGGAC GGTGCGGCGG GGTTCGGACT GAAGCCCGAG
CAAGGAGTAT TTCGCAGAAT AGCGCGCCGC GCTGAGACGA GCACCGGCCC GGGTGATGCC
TCCTTCTCGA TCAATGGTCG GCAAGTCTTC AAGATGTCGA TTGGTGAGGC TGCTAACCCA
GATGATGCCC ATCTGTTCGA GGAGGCCGTC GCCGGTGCCT ACACGCTGCT TGGCTTCGAA
GATATTGACT GGAGCGATGA TCGTTTCGCT ACTCGCGACG CAATCATACA GGCTGTTAGG
GCTATCCAAA GCAAGGATCA GGACGAGCCG AGCGCGATGA GCGGACGCGT TCAGATGCCC
TTTATCTTTC GTAACTGGGT CAGGATTGGT GATATTGTCG TCGTGTCGAA GGGCAACAGC
TCATTCCGCG CAATTGGTGA GATCACTGGC GAGTATCAAT TTGCTCCGCG TGAAGGCGGC
GACTACGCAC ACCGCCGTGC GGTTCGGTGG CTTTGGGTGG ATCGTACAGG CGTTCCAGTT
AGCGAGATCT ATGCGCGAAA TTTCACGCAA AAGTCAATCT ACCTCTTGAC TGAAGCCGAC
CTGAATGTCC CAGCGCTGGA GCGCTATATT GCAAGCCAGC AAGGCACGGG CGGTGGTGCG
CCAGAATCGT TTGTTCTTAT CATCGACGAA ATCAATCGCG CAAATATCTC AAAAGTGTTC
GGCGAACTAA TTACATTGCT CGAACCGGAT AAGCGCATTG GTCGGCCCAA TGCTCTTAAA
GTGCGGCTTC CCTATTCTGG GGATTTGTTC GGCGTTCCGG CAAACCTTCA CATCATCGGT
ACGATGAACA CAGCAGATCG CTCGATCGCA TTGCTTGACA CAGCTCTCCG GCGCCGTTTT
GAATTTCGGG AACTAATGCC CGATCCTTCG CTGCTCGGTA TCGTGGACGG TGTTGATCTT
TCCCGACTGC TCGCTACGAT CAATCAACGA ATTGAATATT TGTTCGATCG GGAGCATCAG
ATAGGCCACG CCTATTTTAT CAGCTGCAAA TCTCGTGCCG ATATAGATGA GGTGATGCGT
TGCAAAGTGA TTCCATTGCT GGCCGAATAT TTTTATGAGG ATTGGTCGAA GGTTGCCGCC
GCGTTGGGTG ACGGTGACGA CAGCGAGGTC GACCTCGAAG GACATTTCAT TGATCGCCAA
CGTTTGAAGC CACCCAAGGG CATAAGCAGC GATGGAGATG GAGCGGTGCG CTATCGCTGG
ACCATCCGAC GTGCCTTTTC ATATAGCGAG TTCTCGGCAG GATGA
|
|---|
| Protein sequence | MRAEDFKAWL EAGGALTEGG RNTRANAVAT IERNLAALGS PNADLEEAWN SDRFEHLRRR
LKELREELAA GGTQYHVLMP QSENPEKRLS SWRAWLGQYG RFLSGEIREH RDADRIRRHV
LENYIEPARE RDEETVDVLV RRVNDVLGLN EAWPNICQAL QGKKFRELAD LEAPEQIGAD
QSPATIFRFH LDETFRADDN LNYARLFVLY DAEGAAFEPV KNRNRETNRL AYRIKPRGSG
NEARDAVEVD TLQQVARAML VDHLAARVKS TRGGAANYAV YGKEKIVRYE LDPSIALEIG
VPPNGEIGQS NDPSSNQAPQ LPSDKEDGLL EQPHATNLIL YGPPGTGKTF TTALEALKLC
GEPVPDSREH LMEAYRRLSD AGRIEFVTFH QSISYEDFVE GLRPTQSGED GAAGFGLKPE
QGVFRRIARR AETSTGPGDA SFSINGRQVF KMSIGEAANP DDAHLFEEAV AGAYTLLGFE
DIDWSDDRFA TRDAIIQAVR AIQSKDQDEP SAMSGRVQMP FIFRNWVRIG DIVVVSKGNS
SFRAIGEITG EYQFAPREGG DYAHRRAVRW LWVDRTGVPV SEIYARNFTQ KSIYLLTEAD
LNVPALERYI ASQQGTGGGA PESFVLIIDE INRANISKVF GELITLLEPD KRIGRPNALK
VRLPYSGDLF GVPANLHIIG TMNTADRSIA LLDTALRRRF EFRELMPDPS LLGIVDGVDL
SRLLATINQR IEYLFDREHQ IGHAYFISCK SRADIDEVMR CKVIPLLAEY FYEDWSKVAA
ALGDGDDSEV DLEGHFIDRQ RLKPPKGISS DGDGAVRYRW TIRRAFSYSE FSAG
|
|---|
| |