| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1504 |
|---|
| Symbol | |
|---|
| ID | 3908417 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 1699448 |
|---|
| End bp | 1700029 |
|---|
| Gene Length | 582 bp |
|---|
| Protein Length | 193 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637883399 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_485125 |
|---|
| Protein GI | 86748629 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3652] Predicted outer membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.393497 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGCG CCGCCATCGC ACTGAGCTGC CTCACGCTCG CTGCGCAGAT ATGCCTGCTC
CCGACCCAGG TTTCCGCCCA GCCGGCGACC AATCAGACCG GCTCCGGCGC TGCCGTGAGG
ATCAGCGCGG ACACGCAGAA ATTCATTCAG CAGGTCACGA TCTCGGATCT GTTCGAACTC
GCGACCGCCC GGCTGGCTCT CGCGCGCGGC ACCGACGCGC AGAAGGCCTT CGCCAACCGA
ATGATCGAGG ACCACGGCAA GACGTCGGCC GAACTGAAGC GCTTCATCGT CGTCGGCAAA
GTCGACATCG ACGTGCCGAG CCAGCTCGAC AGCGCGCATC AGGGCAAATA CGACGCCCTG
AACAACGCGC GCGGCGAGGA GTTCACGGCC TTGTACACTG CGCAGCAGGT CGAGGCGCAC
AATCAGGCGA TCGCGTTGTT CGAACGCTAT GCGGCCAATG GCGACAACGC CGAATTGAAG
GAATGGGCGG CCAACACCGT GCCGGCGCTG AAGCACCATC TGCAGATGGC GCAGGCGCTC
GATCGCCAGG GCGGGCAAGC GGCGGCTCCG GCATCCAAGT AA
|
|---|
| Protein sequence | MKRAAIALSC LTLAAQICLL PTQVSAQPAT NQTGSGAAVR ISADTQKFIQ QVTISDLFEL
ATARLALARG TDAQKAFANR MIEDHGKTSA ELKRFIVVGK VDIDVPSQLD SAHQGKYDAL
NNARGEEFTA LYTAQQVEAH NQAIALFERY AANGDNAELK EWAANTVPAL KHHLQMAQAL
DRQGGQAAAP ASK
|
|---|
| |