| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1469 |
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| Symbol | |
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| ID | 3908781 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 1656218 |
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| End bp | 1659667 |
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| Gene Length | 3450 bp |
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| Protein Length | 1149 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637883363 |
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| Product | PAS/PAC sensor signal transduction histidine kinase |
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| Protein accession | YP_485090 |
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| Protein GI | 86748594 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACGAGTT TGGATTTTCA GTTGCGAGGG GTCGACGATC CGCGGCTTGC GGTTCATGCC
ACCGGCGCGC TTCCGGTCTG GCTGTGGTCG GTCGACGGCA CCCGTGTGCT GTGGGCCAAT
CCGGTCGGCG CCCGGTTGCT CGGCGCGGAG CACGGCAAGG CCCTCGGCGC ACGTATCTTC
GGCCCGGCGG ATCCGCATCG CCGGCTGGTG ATGCAGCTGG CCGGCAAACT TCCGCCGAAC
GGCGCGACGC GGCTGGAGCG GCTGCGCGGC TTCGGCGCGC GTCTCGGCGG ACTGGTGACC
TGCGGCTGCG CCCGGCTGAC ATTCGCCGAC GGCAGCTCCG GCGTACTGAT TGCCGCTGTC
GAACCCGTCG GCCAGCCGAT GCCGCTGGTC GAGCGATTGC GCGGGCTGGT CGAAGGCAGC
GACACCCCGA TCGCCGCGTT CGGCCGCGAC GGCCTGTTCA TCGGCTCCAG CGCCGCCGCG
CGCACCCTGC TCGGCTTCCG CAACCTGACC GAGGCCGGGC TCGATCAGGC CCGCGCCGAG
GCGCTGCAGA ACGGCCGCGC CGAGACGCCG ATCGGGATCG GCCGGATGGT GCTGCAACGC
GTCGGCAGCG GCGGCGATAT CGGGCTGGTG GCGCTGCTCG AACCGGGCGA GCCGGTTGCA
ACGGACCGCA CGCCGGAGGT CCCGATCAGC CAACCCGCCG CGGTTGCGTC CGATATCCCG
ATCGATGGGC CGAGCGAGAC TGTGCCGCCG GAATCGGACG TTCCGGACGA CGAGGCGATC
GACACCATCA GCGAGGCGCC GGCCGAGTTC ACGCGGCTCG GCGAGACGCT GGCGGAGGCG
CAGACGGACA TTCCGCCGAC GCAAGACAAT GCCACCGCCG ACGAACCCTC GCCGCTGGTC
GTGCCGGTTG CCGACGAGTC GCCGGCCGAG GCCGATGCTT CCACGCATGA ATCCGCCGCA
ACTCCCGAAT CTCTTCCTGA GGATAGCGTC GCGCCGCAGC CGCACGACGC TGAAGCGACC
GATCAGCCCG CGCCCGCCGA TGCCCCGTCA CAGCAACAGT CTGAAGATGA AGAGCCGGCG
ACGATCCTCG CGGTCGAGCT GGAGCCGCGC GTCGCAGCGA CGTCGGTCGC GCCTTCGCCG
CCGCGCCAAC ATCCGCTGCG CTTCGTCTGG CAACTCGACG GCGACAGCCG CTTCTCGGTG
AAGTCGGACG AACTGATCTG CCTGATCGGC CCGCGCACGG CCGCGCAGTT CGGCCGGTCC
TGGGCCGAAA TCCGCGCGGC GCTCGCGCTC GATCCCGACG ACCGCTTTGC GCAGGCGATC
GCGACGCGCC ACACCTGGAG CGGCATCACG CTGCATTGGC CGGCCGATGG CAGCGGTGAT
CGTCTGCCGC TGGAGATGTC CGGCCTGCCG GTGCAGGACC GCGACGGCCA TTTCACCGGC
TATCGCGGCT TCGGCGTCTG CCGCGATCTC GACGGCCTCG ATCGCCTCGC GATGCTGCGC
CGGCACGACG GCGCGGACGA ACCTCCGCCG CGCTCGCTGT CGGCGGATTT CACGCCGCGC
GACGCGACGC CCGCCGCGGA CGCGGAACAC GCGCCCATGA CCGACACCTC TGACCACCAA
GCATCGGATA TCATCGTGGA CACCCCGAGA AACGTTCTGC CCTTCCGGCC GGTCCAGGAC
GCCCGTTCGC CGGCGCTGAC GCCGGTCGAA AACAGCGCCT TCAACGAACT CGCCCGGCAA
CTGGCCGAAC GGTTGGAGAG CGACGCCGCG GGCGCCGCCG AGCGGCTGTT CGCGCAGGCC
GCCAACGATC AGGCACCGGA CGCGCCGGCC GACGCGACGC CAGCCGAAGA CACGGCGACG
GCCGAAGCGG TCGCGTCGAA CGACGAACCC GCTGCGCCCT CCGAACCCGC CGCGCCGAAG
GCCGACTGGC TCGCGCCGCT CGCGACGCCG GCCAAGGGCG ACAGCACGCG CGACCGCGTG
CTGCTCGACC TGATGCCGGT CGGCGTGCTG ATCTATCGGC TCGACCGTCT GCTCTACGCC
AACGCCGCAT TCCTGCAGCT GATGGGCCAT GCCAGCCTGT CGGCGCTCGA GGAGGAAGGC
GGCCTCGATG CGCTGTATGT CGAGGAAGGC GTCGGCGGCT CGAGCGGCAC GTCGGAAGCC
GGCACGCCGA TCACCGTGGC GACGCCGTAT TCGGCGCCGA CCGCAGCCCG GCTGCACACC
ATCGAGTGGG ACGGCGATCA GGCGCTGGCG CTGATCTTCG ACGGCACCGC CGAGCGGCCT
GCCGACGTCG TCGCCGCGGC CTCGATCGCG CCCGAGCCCA ATGCGCCGTC GGATGTCGGC
CACGCCAATG CCGAAGAGCT CGGCGCGATC CTCGACACCA CCGCCGAGGG CATCCTGATG
TTCGACGCAG GCGGCCGCAT CAGCGCCTGC AACCGCAGCG CCGAAGCGCT GTTCGGCTAC
GACGGCGACG AGCTGGTCCA GCGCAGCATC GCCGAGCTGT TCGCGCCCGA GAGCAACGAC
GCGGTACGCG CCTATTTCGA CAGCGTAAAG AGCGGCAGCG CCGAAAGCCT GCTCGACCAC
GGCCTCGAGG CGCTCGGCCG GGTCCGCGAA GGCGGGCTGT TTCCGCTGAC GATGACGATC
GGCCGGACCC AGCCCGACGG GCCGAACTAC TTCGCGGTGT TCCGCGATCT GTCGCAGGCG
CGCCGGATCG AGGTCGAACT CGACCAGGTG CGCAAGCTCG CCGATCGCGC GGCCGGCGCC
AAAGCCGACG TGCTGGCGCG GCTCAGCCAC GAGATCCGCA TGCCGCTGAA CGCCATCATC
GGCTTCGCCG AGGTGATGAT CGAGGAGCGT TTCGGCGCGC TCGGCAACGA GCGCTACGCC
GACTATCTGA AGGACATCCG CGCGTCGGGC GAGCGCGTCA TCGGCATCGT CGGCGACCTG
CTCGATCTGT CGCGGATCGA AACCGGCAAG CTCGACCTCG CCTTCACCAG CCAGAACCTC
AACGAACTGG TCGAGCAATG CGTCGCGGTG ATGCAGCCGC GCGCCAATCG CGAGCGCATC
ATCATCCGCA GCTCGCTGGC GCACGCGCTG CCGAGCGTCA CCGCCGACGC GCAGGCGCTG
CGGCAGATCG TGCTGAACCT GATCGGCACC TCGATCCATC TCGCCAATGC CGGCGGCCAG
GTGATCGTCT CGACCGCGCT GAGCGATTTC GGCGAGGTGG TGCTGCGCGT CCGCGACACC
GGTCATCGCC TCAACGACAG CGAAATCGCC GCCGCGCTGC AGCCGTTCAG TACGCCGGCG
CCGAGCGAAC GTTCGGAAGC CTCCGGCGTC AGCCTGTCGC TGACCAAGGC GCTGGTCGAA
GCCAACCGCG CCCAGTTCCA CATCAAGAGT GCGCCGCAAT CCGGCACGCT GATCGAAGTG
GTGTTTTCGC ACGCGACCGC CGCGGCGTGA
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| Protein sequence | MTSLDFQLRG VDDPRLAVHA TGALPVWLWS VDGTRVLWAN PVGARLLGAE HGKALGARIF
GPADPHRRLV MQLAGKLPPN GATRLERLRG FGARLGGLVT CGCARLTFAD GSSGVLIAAV
EPVGQPMPLV ERLRGLVEGS DTPIAAFGRD GLFIGSSAAA RTLLGFRNLT EAGLDQARAE
ALQNGRAETP IGIGRMVLQR VGSGGDIGLV ALLEPGEPVA TDRTPEVPIS QPAAVASDIP
IDGPSETVPP ESDVPDDEAI DTISEAPAEF TRLGETLAEA QTDIPPTQDN ATADEPSPLV
VPVADESPAE ADASTHESAA TPESLPEDSV APQPHDAEAT DQPAPADAPS QQQSEDEEPA
TILAVELEPR VAATSVAPSP PRQHPLRFVW QLDGDSRFSV KSDELICLIG PRTAAQFGRS
WAEIRAALAL DPDDRFAQAI ATRHTWSGIT LHWPADGSGD RLPLEMSGLP VQDRDGHFTG
YRGFGVCRDL DGLDRLAMLR RHDGADEPPP RSLSADFTPR DATPAADAEH APMTDTSDHQ
ASDIIVDTPR NVLPFRPVQD ARSPALTPVE NSAFNELARQ LAERLESDAA GAAERLFAQA
ANDQAPDAPA DATPAEDTAT AEAVASNDEP AAPSEPAAPK ADWLAPLATP AKGDSTRDRV
LLDLMPVGVL IYRLDRLLYA NAAFLQLMGH ASLSALEEEG GLDALYVEEG VGGSSGTSEA
GTPITVATPY SAPTAARLHT IEWDGDQALA LIFDGTAERP ADVVAAASIA PEPNAPSDVG
HANAEELGAI LDTTAEGILM FDAGGRISAC NRSAEALFGY DGDELVQRSI AELFAPESND
AVRAYFDSVK SGSAESLLDH GLEALGRVRE GGLFPLTMTI GRTQPDGPNY FAVFRDLSQA
RRIEVELDQV RKLADRAAGA KADVLARLSH EIRMPLNAII GFAEVMIEER FGALGNERYA
DYLKDIRASG ERVIGIVGDL LDLSRIETGK LDLAFTSQNL NELVEQCVAV MQPRANRERI
IIRSSLAHAL PSVTADAQAL RQIVLNLIGT SIHLANAGGQ VIVSTALSDF GEVVLRVRDT
GHRLNDSEIA AALQPFSTPA PSERSEASGV SLSLTKALVE ANRAQFHIKS APQSGTLIEV
VFSHATAAA
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