| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1452 |
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| Symbol | |
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| ID | 3908402 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 1638266 |
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| End bp | 1640950 |
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| Gene Length | 2685 bp |
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| Protein Length | 894 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637883346 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_485073 |
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| Protein GI | 86748577 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.957264 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.595774 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTTTGA GCATTGTGAA GAAAGGGGCC GGGGCAGCGG AGGTTGTGGC GGCGGCTTTG
CTTCTCGCGT CCGGCGAGAT TGCGCAGGCC TCCTCCAGCT TCGCGCCGAC CAGTTACATT
GGTGGATTCG ACCCCGAACT GATCTGGGAA GTGCTGATCG GCGGCTTCGT GCTGGCGTCG
TTCACCAGCG CCATCGCACT GTGGGCGACC GCGATGCTGC GCAAGCAGCG CCGTCTCCAG
CGCCGCAAGA ACATGCTGGT CGACTCGGTG CTCAACAAGC TGCAGCAGGG CGTCGTCATC
GTCGACGCCA GGAACCGGTT GGTGTTCTGC AACGATCGCT ATCTCGAGAT GTACGGGCTG
CAGCGCTCCG ATGCGCCGTA CGGCATTCCC GGCGGCGATC TGCTTTCGCT CCGCCGCGCC
CGCGGCACGC TCGATGTCAG CAACGAGGAG TTCCTGCGTA ACGCCAGGAT GCCCGAAGGC
TATATCGGCG AACTGCCGGA CGGTCGCTTC GTGCAGGTGA AGTTCTCGGC GCTCGCGAAC
GGCGGCATGA TTTCGACCCA CGACGATTGC ACCGAGCTTC GTCTGCTCTC GAAGCAGCTC
GTGACCACCA AGCAGTTCCT GGAATCGGTG ATCGATAACA TCCCGGTCTG CGTCGCGGCC
AAGAACATCG AAGACGGCCG CTACATCCTC GCCAATCGCG CGTTCGAGAA ATTGTCGGGA
ATGCCGCGCG ACCGGATCAT CGGCGCGACC GCCGAGGAAA TCTACTCGCC GCGCACCGCC
ACCGCGGTGC AGGATGTCGA TCGCCTGGCG CTGGATGCCG GCAAGAAGGG ATTCCGCACC
GAGCTGACCG TCGAATTCGG CCGGCGCGAA CTGGTGCTGG AGACCGATCG CGTCGTCGCC
TACAACGATC GCAACGAACC GGAATTCATC ATCGCGCTGT TCGAGGACAT CACCGACCGG
CAGGTGCTGG CGCGCGAGCT CGACAAGACG CGGAAGTTCC TCGAACTGGT GGTCGACAAC
ATTCCGGTCG GGCTCACGGT GCAGAGCACC AGCAGCGGCC GCTATCTGCT CGCCAATCGC
GGCGCCGAGA TCATCCTCAA TCGTCGCCGC GAGGACGCCA TCGGCCTGAC CTGCGGCGAT
ATCTTCAACC CCAAGGAAGC CAGGCTGATC CGCGAGCGCG ACGAACTCGC GGTCCGCAAG
GGCGACCTGA TGGTCGAAGA GCATCCGATC AGCACCCGGA ACGGCCTGCG CCTGTTCGTG
ACCCGCCGCA TCACCGTCGC CGACGAGGCG GGGGCGGAGA GCTATCTGAT CAAGACCCAT
GTCGACGTCA CCGATCGGCG CCAGACCGAA GCGCGGATGG CGCACATGGC GTATCACGAC
GGCCTGACCG ACCTGCCGAA CCGCACCTCC TTCCTGAAGT CGCTGTCGCA GATGATCGAG
GCCTGCGACG CTGCGGTGGA CGAGTTCGCG GTGCTGTCGG TCGATCTCGA CGGGCTGTCC
GAGATCAACG ATGTGTTCGG CCACGCCATC GGCGACCAGC TGCTGATCGA GGTCGCGTCC
CGGATCGAGC AGGCGTCGCA GGGCGGCGTC GTGGCCCGGC TCGGCGGCGA CGAATTCGGG
CTGCTGATCG ACGGCCCGCA GCCGGAAGCG GCGCGCAGAC TCGCCGAGCG GGTTTCCAAG
GCGCTGGCCC GCGACTTCGA GATCGACGGC AAGACGGTGC GGACCGGAGC CACCACCGGC
ATCGCGCTGT TTCCGCGCGA CGGCAGGGAC GCGGCCTCGC TGCTCGCCAA TGCCAGCGCG
GCGTTGTTCC GCGCCAAGGC GCATGCGCGC GGCTCGATCG GCCTGTTCGC CCCCGAAATG
GATATGCAGA TCCGCGACCG CAGAGCGCTG CATCAGGATC TGTCGAACGC GATCCGTAAC
GGCGAGTTGT CGCTGTACTA CCAGCCGCAG GCGGCGAGCA AAAGACAGAT CGGCGAGGGC
GACATCGTCG GCTTCGAAGC GCTGGCGCGG TGGCGCCATC CGACGCGCGG TTTCGTGCCG
CCGGGCGAGT TCATTCCGCT GGCGGAAGAA AGCGGGCTGA TCGTCGAGAT CGGCGAGTGG
ATCTTGCGCG AGGCCTGCCG TGAAGCGGCG TCGTGGCCGA AGCCCTTGCA GATCGCGGTC
AACCTGTCTC CGGCGCAGTT CCTCAACACC GATTTGGTCG CGACCGTGCA TCAGGTGCTG
GTCGAGACCG GGTTGCAGCC GGGCCGGCTC GAGCTGGAAA TCACCGAAGG CGTGCTGATC
GACGATTTCG ATCGCGGCCT GGCGCTGCTG CGCCGGCTGA AGACCCTCGG GGTCCGCGTC
TCGATGGACG ATTTCGGCAG CGGCTATTCG TCGCTGACCT ATCTGCAGGC GTTCCCGTTC
GACAAGATCA AGATCGACCG CGCCTTCATC ATGCATCTCG GCCGCAACGT CCAATCGGCG
GCGATCGTGC GGGCCGTGAT CGGCCTCGGC CACGGCCTCG GCGTCTCGCT GGTCGCGGAG
GGCGTCGAGA CCCAGGAGCA GCTCGATTTT CTGGTCGACG AGGGCTGCGA TGCCGTGCAG
GGCTATCTGA TCGGGATGCC GGCGCCGATC GATCAATATC CGGTTCTGGT CGGCCTCGCG
CCATCACCGG ACCCGATGCC GGCGCGCGCC CGCCAGGTCA GCTGA
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| Protein sequence | MALSIVKKGA GAAEVVAAAL LLASGEIAQA SSSFAPTSYI GGFDPELIWE VLIGGFVLAS
FTSAIALWAT AMLRKQRRLQ RRKNMLVDSV LNKLQQGVVI VDARNRLVFC NDRYLEMYGL
QRSDAPYGIP GGDLLSLRRA RGTLDVSNEE FLRNARMPEG YIGELPDGRF VQVKFSALAN
GGMISTHDDC TELRLLSKQL VTTKQFLESV IDNIPVCVAA KNIEDGRYIL ANRAFEKLSG
MPRDRIIGAT AEEIYSPRTA TAVQDVDRLA LDAGKKGFRT ELTVEFGRRE LVLETDRVVA
YNDRNEPEFI IALFEDITDR QVLARELDKT RKFLELVVDN IPVGLTVQST SSGRYLLANR
GAEIILNRRR EDAIGLTCGD IFNPKEARLI RERDELAVRK GDLMVEEHPI STRNGLRLFV
TRRITVADEA GAESYLIKTH VDVTDRRQTE ARMAHMAYHD GLTDLPNRTS FLKSLSQMIE
ACDAAVDEFA VLSVDLDGLS EINDVFGHAI GDQLLIEVAS RIEQASQGGV VARLGGDEFG
LLIDGPQPEA ARRLAERVSK ALARDFEIDG KTVRTGATTG IALFPRDGRD AASLLANASA
ALFRAKAHAR GSIGLFAPEM DMQIRDRRAL HQDLSNAIRN GELSLYYQPQ AASKRQIGEG
DIVGFEALAR WRHPTRGFVP PGEFIPLAEE SGLIVEIGEW ILREACREAA SWPKPLQIAV
NLSPAQFLNT DLVATVHQVL VETGLQPGRL ELEITEGVLI DDFDRGLALL RRLKTLGVRV
SMDDFGSGYS SLTYLQAFPF DKIKIDRAFI MHLGRNVQSA AIVRAVIGLG HGLGVSLVAE
GVETQEQLDF LVDEGCDAVQ GYLIGMPAPI DQYPVLVGLA PSPDPMPARA RQVS
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