| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1407 |
|---|
| Symbol | |
|---|
| ID | 3908357 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 1598342 |
|---|
| End bp | 1599514 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637883301 |
|---|
| Product | patatin |
|---|
| Protein accession | YP_485028 |
|---|
| Protein GI | 86748532 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1752] Predicted esterase of the alpha-beta hydrolase superfamily |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCGGCGT CCTTCCCCCG GCGTTCGAAG CTGATGCAAT CTCCTCCCGA TCGACCCGAC
TCCTCCTTGC GTAACGCGCG GCGCGTGCTG GTGCTGCAGG GCGGCGGTGC GCTCGGCTCG
TACCAGGCCG GCGCCTATCA GGCGCTGTGC CATCACGATT TCGAGCCGCA ATGGCTCGCC
GGCATCTCGA TCGGCGCCAT CAACGCCGCG ATCATCGCCG GCAATCCGCG CGAGCAGCGC
GTCGACAAGC TCAAGCAGTT CTGGGAAATG GCGTCGTCGC CGGTGCCGTG GCAGCCGATG
CTGCACAACG ACCATGCGCA TTCGCTGTTC AACGAAGCCA GCGCCGCGGT GATCGCAGCC
TTCGGCGTGC CGGGGTTCTT CACGCCGCGG TTTCCGCCGT CGCATCTGAT GCCGACGGCG
GATCCGGAGG TGCTGAGCTA TTACGACACG TCGCCGCTGC GCAGCACGCT GGAGCGGCTG
GTCGACTTCG ACCGGCTCAA CACCAACGGC ATCCGGCTCA GCGTCGGCGC AGTCAATGTC
GTCACCGGTA ATTTCGAATA TTTCGACAAT ACGAGGCAGA CCATCGGCCC CGAGCACATC
ATGGCCTCCG CTGCGCTGCC CCCCGGGTTT CCCGCGATCG AGATCGACGG ACATTACTAC
TGGGACGGCG GCGTCGCCTC CAACACGCCG CTCGACTACG TGCTGGAGTC GGAGGACCGC
GAGGACCTGC TGATCTTTCA GGTCGACCTG TTCAGCGCGC ACGGTCGCTT GCCGCAGACC
CTGCTGGAGG CGGCCGAGCG CGAAAAGGAC ATTCGCTTCT CCAGCCGCAC CCGGCTCAAC
ACCGACAAGA ACAAGCAGAT CCACAACATC CGCAAGACGC TGCGTCATCT GATGGGCCGG
CTGCCGGACG AACTGCGCGA CGATCCGGCC TATGCGATCC TGCACCAGGC GGCGAAGGAG
AACGCCGTGA CCTTGGTGCA CCTGATCTAT CGCAAGCGCG ACCACGAGGC GTCGTCCAAG
GACTATGATT TCTCCCGTCT CAACATGATC GAGCACTGGA AATCCGGCGA ACAGGATGTC
TATGTCTCGA TGCGCCACGA GGAGTGGCAG AGCGGGCCGC AGGACGGCGA GACCATGGTG
ACCTGGGACC TCACCCGGGA TGCGATCAAA TAG
|
|---|
| Protein sequence | MPASFPRRSK LMQSPPDRPD SSLRNARRVL VLQGGGALGS YQAGAYQALC HHDFEPQWLA
GISIGAINAA IIAGNPREQR VDKLKQFWEM ASSPVPWQPM LHNDHAHSLF NEASAAVIAA
FGVPGFFTPR FPPSHLMPTA DPEVLSYYDT SPLRSTLERL VDFDRLNTNG IRLSVGAVNV
VTGNFEYFDN TRQTIGPEHI MASAALPPGF PAIEIDGHYY WDGGVASNTP LDYVLESEDR
EDLLIFQVDL FSAHGRLPQT LLEAAEREKD IRFSSRTRLN TDKNKQIHNI RKTLRHLMGR
LPDELRDDPA YAILHQAAKE NAVTLVHLIY RKRDHEASSK DYDFSRLNMI EHWKSGEQDV
YVSMRHEEWQ SGPQDGETMV TWDLTRDAIK
|
|---|
| |