| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1369 |
|---|
| Symbol | |
|---|
| ID | 3908474 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 1560271 |
|---|
| End bp | 1561914 |
|---|
| Gene Length | 1644 bp |
|---|
| Protein Length | 547 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637883263 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_484990 |
|---|
| Protein GI | 86748494 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2187] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCATGA TGACGGCCAC TGGCGTTCGC GGTTCTGCTC CACTTCCAGA CAGTTCGGAA
TTTCTCCAGG CAGTCATGAT GGCAGAACCG ATCCCCGCAT CCGGCGCGGT CCGACAGGAG
GACATCCTCC AATTCGTCGC CGACCCGGCG ACGCATGGTG GCTTGCCGGT CAGACGTATC
GACACCCATG GCGCCGCGGT GTTTCTGGTC GGCGACCGCG CGCTGAAGAT CAAGCGGGCG
GTGCGGTTCC CGTTCCTCGA TTATTCGACG CCGGCGCGGC GCAAGATCGC CTGCGAGCAG
GAACTCGTGG TCAATCGCCG GTTCGCGCCG CAGATCTATC GCCGGGTCCT GCCGATCACC
CGCAAGGCCG ACGGAACGCT CGAGCTCGGC GGGGACGGCG AAGCGATCGA ATGGGCGGTC
GACATGATGC GTTTCGACGA ACGCCGCACG GTCGACCATC TCGCCGCCGC AGGCCCGCTC
GCGCCGGATC TCGTCACCGC CATCGCCGAC GTGATCGCTG CGTCGCATCG TTCCGCGCCG
GAAGCCGCCA CCGCGCCCTG GATTGCCTCG ATCGAGCTGA TCATCGCCGA CAACACCGCC
TCGTTCACAT CCGGCGGCTT TCCGGCCGAT CAGATCGCAG CGCTCGATCG CGCCAGCCGC
GCTGCGTTCG AACGCCACCG CGGCCTGCTC GGCCAGCGCG GCGCGCAAGG GTTCGTGCGC
CGGTGCCACG GCGACCTGCA TCTGGCCAAC ATCGTGGTGA TCGACAGCGC GCCGGTGCTG
TTCGACGCGA TCGAGTTCGA TCCTTTGATC GCCTCGGTCG ACGTGCTGTA CGACCTCGCC
TTCCCGCTGA TGGACTTCGT CCATTACGGC CGCTGCGGCG CTGCCGCCGA ACTGCTGAAC
CGCTATCTGG CGATCACCCC CTCACAGAAC GACGACGCGT TCGGCCTGCT CCCGCTGATG
CTGTCGATGC GCGCCGCGAT CCGCGCCAAG GTGATGCTGT CGCGGCCGGC CGACGACGCC
GGAACGATGC GCGGCAACCG GGAGACCGCC GGCGCCTATT TCGCCCTCGC CGCACGCCTG
ATCTCGCCGC CCCAGCCGCG GCTGCTCGCC GTCGGCGGAC TGTCCGGAAC CGGCAAGTCG
GTGCTGGCCC GTGCGCTGGC TGGTCGTATC CCGCCGTTGC CCGGCGCTGT CGTGCTGCGG
TCCGACGTCG CACGCAAGCG GCTGTTCGGC GTCGGCGACA CCGAACGGCT GCCGCCGACC
GCATATTCGC CCGAGGTGAC GGCCGAGGTC TATCGCGGCC TCGGCGAGCG CGCCGCCCAT
ATTCTGGCGC AAGGGCATTC GGTGATCGTC GATGCGGTGT TCGCCAAGGC CGAGGAGCGG
CAGGCGATCG AAGCCATTGC GACGGACGCC GGGTGCGCGA TGCTCGGGTT GTATCTCATC
GCCGATCTGG CGACCCGGAT CGATCGCGTC AGCCGCCGCG TCGGCGACGC CTCGGACGCA
ACGCCCGACA TCGTCCGGCA GCAGCAAGCC TACGCGCAGG ACGCTGTCGG CTGGACCGAG
ATCGACGCCG CCGGCACGCC AGACCAAACG CTGGCCAGCG CCAAGGCGGC GCTGGGGCGC
GACGATCAGG CCTGCAGCAC GTAG
|
|---|
| Protein sequence | MSMMTATGVR GSAPLPDSSE FLQAVMMAEP IPASGAVRQE DILQFVADPA THGGLPVRRI
DTHGAAVFLV GDRALKIKRA VRFPFLDYST PARRKIACEQ ELVVNRRFAP QIYRRVLPIT
RKADGTLELG GDGEAIEWAV DMMRFDERRT VDHLAAAGPL APDLVTAIAD VIAASHRSAP
EAATAPWIAS IELIIADNTA SFTSGGFPAD QIAALDRASR AAFERHRGLL GQRGAQGFVR
RCHGDLHLAN IVVIDSAPVL FDAIEFDPLI ASVDVLYDLA FPLMDFVHYG RCGAAAELLN
RYLAITPSQN DDAFGLLPLM LSMRAAIRAK VMLSRPADDA GTMRGNRETA GAYFALAARL
ISPPQPRLLA VGGLSGTGKS VLARALAGRI PPLPGAVVLR SDVARKRLFG VGDTERLPPT
AYSPEVTAEV YRGLGERAAH ILAQGHSVIV DAVFAKAEER QAIEAIATDA GCAMLGLYLI
ADLATRIDRV SRRVGDASDA TPDIVRQQQA YAQDAVGWTE IDAAGTPDQT LASAKAALGR
DDQACST
|
|---|
| |