| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1349 |
|---|
| Symbol | |
|---|
| ID | 3908454 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 1536880 |
|---|
| End bp | 1538625 |
|---|
| Gene Length | 1746 bp |
|---|
| Protein Length | 581 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637883243 |
|---|
| Product | bifunctional NADH:ubiquinone oxidoreductase subunit C/D |
|---|
| Protein accession | YP_484970 |
|---|
| Protein GI | 86748474 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0649] NADH:ubiquinone oxidoreductase 49 kD subunit 7
[COG0852] NADH:ubiquinone oxidoreductase 27 kD subunit |
|---|
| TIGRFAM ID | [TIGR01962] NADH dehydrogenase I, D subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.738906 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.499923 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCGCAA CCGACCTCGT CAGCGAACTC GGCGCGCGAT TCGGAGACGC GGTGCTGGGC
GAGCAGACCA CGCGTGAGCG GTTTCCGACG GTGTGGATCC GTCCGGAGGC GTCGGCTGCC
GTGCATCGCT ATCTGAAGCA CGAGGTCGAG CGCCCGTTCA GGATGCTGGT CGATCTGTGG
GCGATCGACG AGACCGCGCG CAAACATCGC GAGGGGCAGC CGCCGTCCGG CATCACCATC
GCCAGCCATC TGATGTCGCA CGAGCGCAAC GCCGACATCC GGCTGAAGGT CGGGCTCGAC
GCCGAGTATC CGAGCGCGAA GTCGATCGCG GGCGTGTACC CCAACGCGGC GTGGTACGAG
CGCGAAGCCT ATGACATGTT CGGCGTCGAA TTCGAAGCCC AGCCGCATTC GCTGCGCATT
CTGCTGCCGC CCGGATGGGA AGGCCATCCG ATGCGCAAGA CCCAGCCCGG CCGCGCCACC
GAGCGGCCGC TGTTCAACAT GACCGCGGCG CTGTTCGACG CCAAGGAGCA CGCGCTCGCC
GCCGATCCGG AGAAATTCGG CCTGCCGACG CATCGCGACG GCGTCGAACT GATGATCCTG
AACTACGGGC CGCACAGCAT GGCGACCCAT GGCGTGTTTC GCATCGTGCT GGCGCTCGAT
GGCGAGGAGA TCGTCGCGGC GCGGCCGGAC ATCGGTTTCC ATCATCGCGG CGCCGAGAAA
ATGGCGGAGC GCCAGACCTG GCACAATTTC CTGCCCTACA CCGACCGCGT CGACTATCTC
GGCGGCGTGA TGGGCGAGAT GCCGTATCTG CAGGCGGTCG AGAAAGCCTG CGGCATCACC
GTACCGGATC GCGCGCTGAC GGTGCGGGTG ATGCTGTCGG AAATGTTCCG CATCATGAAT
CACCTGCTGT TCTACGGCAC CATGGCGCAG GACACCGGCG CGATGTCGCC GGTGTTCTAC
ATGTTCGTCG ATCGCGAGCG CGGCTACCGG GTGATCGAGG CGATCACCGG CGCGCGGATG
CATCCCGGCT ATTTCCGCAT CGGCGGGCTG TCGATGGACC TGCCGCAGGG CTGGGACAGG
CTGGTGCGCG AATTCCTCGA CTGGATGCCG GCGCGGCTTG CCGACTACGA AGGCATGGTG
TTGCGCAATG AGATCTTCCA GGCGCGGACC AAGGGAGTTG CTGCCTACGA CACCGCGATG
GCGCTGGACT GGGGCGTCAC CGGGCCCGGG CTGCGCGCGA CCGGCTCCGC ATGGGACGTC
CGCAAGGCGC GGCCCTATTC GGGCTTCGAG AATTTCGAGT TCGAAATTCC GGTCGGCCAT
AACGGCGATT GCTACGACCG CACCGTGGTG CGGGTCGAGG AGATCCGCCA ATCGCTGAAA
ATCATCCGGC AGTGCGTCGA CAACATGCCG TCCGGCCCGA TCAAGGCCGA CCATCCGCTG
ACCACGCCGC CGCCGCGCGA GCGGATGCTG CACGACATCG AGACCATGAT CCATCATTTC
GTCGGCGCCA GCTGGGGGCC GGTGCTGCCG CCGGGTGAGA CCACCGGGCA GGTCGAGACC
GTGCGCGGGC TCACGCAATT CGCGCTGATT TCCGACGGCG AACCGTCGAG CTATCGCACG
CGGATTCGCA CGCCGTCGTT CCCGCATCTG CAGATGATTT CGGCGGTGGC GCCCGGCATG
ATGGTGGCCG ATCTCGTCGC CTATCTGGGC AGTATCGACT ACGTGATGTC GGACGTCGAC
CGATGA
|
|---|
| Protein sequence | MSATDLVSEL GARFGDAVLG EQTTRERFPT VWIRPEASAA VHRYLKHEVE RPFRMLVDLW
AIDETARKHR EGQPPSGITI ASHLMSHERN ADIRLKVGLD AEYPSAKSIA GVYPNAAWYE
REAYDMFGVE FEAQPHSLRI LLPPGWEGHP MRKTQPGRAT ERPLFNMTAA LFDAKEHALA
ADPEKFGLPT HRDGVELMIL NYGPHSMATH GVFRIVLALD GEEIVAARPD IGFHHRGAEK
MAERQTWHNF LPYTDRVDYL GGVMGEMPYL QAVEKACGIT VPDRALTVRV MLSEMFRIMN
HLLFYGTMAQ DTGAMSPVFY MFVDRERGYR VIEAITGARM HPGYFRIGGL SMDLPQGWDR
LVREFLDWMP ARLADYEGMV LRNEIFQART KGVAAYDTAM ALDWGVTGPG LRATGSAWDV
RKARPYSGFE NFEFEIPVGH NGDCYDRTVV RVEEIRQSLK IIRQCVDNMP SGPIKADHPL
TTPPPRERML HDIETMIHHF VGASWGPVLP PGETTGQVET VRGLTQFALI SDGEPSSYRT
RIRTPSFPHL QMISAVAPGM MVADLVAYLG SIDYVMSDVD R
|
|---|
| |