| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1297 |
|---|
| Symbol | |
|---|
| ID | 3908170 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 1479172 |
|---|
| End bp | 1480374 |
|---|
| Gene Length | 1203 bp |
|---|
| Protein Length | 400 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637883191 |
|---|
| Product | aspartate aminotransferase |
|---|
| Protein accession | YP_484918 |
|---|
| Protein GI | 86748422 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0436] Aspartate/tyrosine/aromatic aminotransferase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.216369 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 15 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTTCC TGTCCACCGC GCTCGATCGT GTGAAGCCGT CCGCGACCAT CGCGGTCACG
GACAAGGCAC GTGAGCTGAA AGCGGCGGGC CGCAACGTCA TCGGGCTCGG CTCCGGCGAG
CCGGATTTCG ACACGCCCGC CAACATCAAG CTGGCGGCGA TCCACGCCAT CGAGGCCGGC
AAGACCAAGT ACACCGCGGT CGACGGCATT CCGGAGCTGA AGCAGGCGAT CATCGACAAG
TTTCAGCGCG AGAACGGCCT GACCTACAAG CCCAACCAGA TCATCGTCGG CACCGGCGGC
AAGCAGGTGC TGTACAACGC GCTGATCGCC ACCATCAATC CCGGCGACGA GGTGATCATC
CCGGCGCCGT ATTGGGTCAG CTATCCGGAA ATGGTGGCGC TCGCCGGCGG CGAGTCGGTG
CCGGTGGTGT GCCCGGCGGA ATCCGGCTTC AAGCTGCAGC CGGCGGCGCT GGAGGCAGCG
ATTACGCCGA AGACCAAGTG GATCATTCTC AATTCGCCGT CGAACCCGAC CGGCGCCGCC
TATTCGCGCG AAGAGTTGAA GGCGCTCACC GACGTGCTGG TCAAGCATCC GCACGTCTGG
GTGATGACCG ACGACATGTA CGAGCATCTC GTCTACGACG ATTTCGACTT CACCACCCCG
GCGCAGATCG AGCCGCGTCT GTTCGATCGC ACGCTGACCG TGAACGGCGT GTCGAAATCC
TATTGTATGA CCGGCTGGCG GATCGGCTAT GCGGGCGGCC CGGCGCAATT GATCAAGGCG
ATGGCGACGA TCCAGTCGCA GTCGACCTCG AACCCGTCCT CGATCGCCCA ATGGGCGGCG
GTGGAAGCGC TCAACGGCCC GCAGGACTTC ATCGCCGCCC ACAACAAGGT GTTCAAGGAG
CGCCGCGACC TCGTGGTGTC GATGCTGAAC CAGGCGTCGG GGATCGATTG CCCGCGGCCG
GAAGGGGCGT TCTACGTCTA TCCGTCCTGC GCCGGCACGA TCGGCAAGAC CGCGCCGTCC
GGCAAGGTCA TCGAGACCGA TCAGGACTTC GTCACCGAGC TGCTCGAAGC CGAGGGCGTC
GCGGTGGTGC AGGGCTCGGC GTTCGGCCTC GGCCCGGCGT TCCGGATTTC CTACGCGACG
AAAACCTCGG ATCTCGAAGA AGCCTGCAAG CGCATCCAGC GCTTTTGCGG GAACCTGCGC
TGA
|
|---|
| Protein sequence | MSFLSTALDR VKPSATIAVT DKARELKAAG RNVIGLGSGE PDFDTPANIK LAAIHAIEAG
KTKYTAVDGI PELKQAIIDK FQRENGLTYK PNQIIVGTGG KQVLYNALIA TINPGDEVII
PAPYWVSYPE MVALAGGESV PVVCPAESGF KLQPAALEAA ITPKTKWIIL NSPSNPTGAA
YSREELKALT DVLVKHPHVW VMTDDMYEHL VYDDFDFTTP AQIEPRLFDR TLTVNGVSKS
YCMTGWRIGY AGGPAQLIKA MATIQSQSTS NPSSIAQWAA VEALNGPQDF IAAHNKVFKE
RRDLVVSMLN QASGIDCPRP EGAFYVYPSC AGTIGKTAPS GKVIETDQDF VTELLEAEGV
AVVQGSAFGL GPAFRISYAT KTSDLEEACK RIQRFCGNLR
|
|---|
| |