| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1225 |
|---|
| Symbol | |
|---|
| ID | 3910160 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 1401931 |
|---|
| End bp | 1403061 |
|---|
| Gene Length | 1131 bp |
|---|
| Protein Length | 376 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 637883119 |
|---|
| Product | carboxypeptidase |
|---|
| Protein accession | YP_484846 |
|---|
| Protein GI | 86748350 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0624] Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCCAG CAAATCTGCC GTTTGATTCC GAAGCCATGC TGCAAGGCCT GCGCGCCTGG
GTCGAGTGCG AAAGCCCGAC CTGGGACAAA GCCGCCGTCG AGCGCATGCT CGACCTCGCC
GCGCGCGACA TGGCGGTGAT GGGTGCGTCG ATCGAACGCA TCGCCGGACG GCAGGGCTTC
GCCGGCTGTG TTCGCGCACG CTTTCCGCAC CCGCGGCAGG GCGAGCCCGG CATCCTGATC
GCCGGCCATC TCGACACCGT GCATCCGGTC GGCACGATCG AGAAACTGCA ATGGCGCCGC
GACGGCAACA AATGCTACGG CCCGGGCATC TTCGACATGA AGGGCGGCAA CTATCTGACG
CTCGAAGCCA TCCGCCAGCT CGCGCGCGCG TCGTTCACGA CGCCGCTGCC GGTCACCGTG
CTGTTCACGC CGGACGAGGA AGTCGGCACG CCCTCGACCC GGGACATCAT CGAGGCGGAG
GCCGCCCGCA ACAAATACGT GCTGGTGCCG GAGCCCGGCC GCCCCGACAA CGGCGTCGTC
ACCGGCCGCT ACGCGATCGC GCGATTCAAT CTGACGGCGA CCGGCAAGCC CAGCCACGCC
GGCGCGACGC TGTCCTCGGG ACGTTCCGCG ATCCGGGAAA TGGCGCGGCA GATATTGGCG
ATCGACGCGA TGACGACGGA GGACTGCACG TTCAGCGTCG GCATCGTGCA CGGCGGACAA
TGGGTCAATT GCGTCGCCAC CACCTGCACC GGCGAGGCGC TCAGCATGGC GAAGCGGCAG
GCCGATCTCG ACCGCGGCGT CGAACGGATG CTGGCGCTGT CCGGCACCAG CAACGACGTC
GGCTTCGAAG TGACGCGCGG CGTGACGCGG CCGGTCTGGG AGCCCGACGC CGGCACCATG
GCGCTGTACC AGAAGGCGGC CGCGATCGCC GACCAGCTCG GGCTGAAGCT GCCGCACGGC
AGCGCCGGCG GCGGTTCCGA CGGCAACTTC ACCGGCGCGA TGGGGATCCC GACTCTCGAC
GGCCTCGGCG TGCGTGGCGC CGACGCCCAC ACGCTGAACG AGCATATCGA AGTCGATAGT
CTGGCGGAAC GCGGGCGCCT GATGGCCGGG CTGCTCGCGA CTCTCGCATG A
|
|---|
| Protein sequence | MNPANLPFDS EAMLQGLRAW VECESPTWDK AAVERMLDLA ARDMAVMGAS IERIAGRQGF
AGCVRARFPH PRQGEPGILI AGHLDTVHPV GTIEKLQWRR DGNKCYGPGI FDMKGGNYLT
LEAIRQLARA SFTTPLPVTV LFTPDEEVGT PSTRDIIEAE AARNKYVLVP EPGRPDNGVV
TGRYAIARFN LTATGKPSHA GATLSSGRSA IREMARQILA IDAMTTEDCT FSVGIVHGGQ
WVNCVATTCT GEALSMAKRQ ADLDRGVERM LALSGTSNDV GFEVTRGVTR PVWEPDAGTM
ALYQKAAAIA DQLGLKLPHG SAGGGSDGNF TGAMGIPTLD GLGVRGADAH TLNEHIEVDS
LAERGRLMAG LLATLA
|
|---|
| |