| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1171 |
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| Symbol | |
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| ID | 3910106 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 1343935 |
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| End bp | 1346289 |
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| Gene Length | 2355 bp |
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| Protein Length | 784 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 637883065 |
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| Product | pseudouridine synthase Rsu |
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| Protein accession | YP_484792 |
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| Protein GI | 86748296 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
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| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.312711 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCCGCG ACACCGACAA AAACAACGCT TCCGCGCGGG GTCGCCGCGA TCGGCCCGGC
GCCGGCAAGG GCGCTTCCGG CGGCAAAGGC GCTTCCGGCG GGAAGGGCGG CTTCGGCGGC
AAAGGCGCGG GCGGCAAGGG GCCGGGCGGC GGCAAGAGTG CCTCCGGCGG CAAGGGCCGG
TCCGGCGCGG CGCGCGGCCC GGAGAAGAAA TTCGCCAAGC GCGGCGAGGC TTATGAGCCC
CGCGGCGACA AGCCTTTTGC CAAAAAAGCG CCCGGCGGCG ACGCCAAGCG CAGCTTCGGC
GGCGAGGGCA AGCGGCCCTA CGTGAAGCGC GAGGGTGCTG CGCCGCGCCG CGATTTCGAG
GCTCGGCCGC GCCGCGACGA CGGCGACGCG CCGCGTCCGC GTTTCAACCG CGACGAGCGC
CCCGCGCGCA GCGGCGGCGA CCGTCCCGAG CGCGGTCCGC GCAAGGAGTT CGGCGACAAG
CGCTCGTTCG CGCCGCGCGA GGGCGGCGAC AAACGGCCCT ATACGCCGCG CGCCGACCGC
GGTGACGGCG CCCGTCCGGC AGGCCGGTTC GGCGACAAGA AATTCGGCGA CCGCAAGCCC
TATGCCTCGC GGGAAGGCGG CGAAAAACGC CCGTATACGC CCCGCGAGGG TGGCGACAAG
CGGCCCTATA CGCCGCGCGA AGGCGGTGGC GAGAAGCGTC CTTACGCCGC CCGCGCCGGC
GGCGAGAAGC GCTCTTATGC GCCGCGCGGG GATGGTGAGA AGCGGCCCTA TACGCCCCGC
GCAGGTGGCG ACAAGCGGCC TTACGCGGCC CGCGACGGCG GCGGCGAGAA GCGCGCTTAC
GCACAGCGCG GGGACGGCGA GAAGCGTCCC TATACGCCGC GCGAAGGCGG CGACAAGCGC
CCGTTCAAGC CGCGCGAGGG CGGCGATCGG AAATTCGGCC GCGGCGCCCC GGATCGTGGC
CCGCGCAAGG AGTTCGGCAG CCGTCCGGAT CGCGGGGCCG ATCGCGGCGA ATCCAAGCCT
TGGCAGAAGC GCGACGGCGC CTCCGCCGAG CGCAGCGAGC GCGGCCCGCG CAGCTTCGAC
AAGCCGCGGT TCGACAAGCC GCGCGAGGAT CGCGGTGGCG ATCGTCCCAA GTTCGAACGC
CGCGAACGGT CGGGCGACTG GCACGAACAT CCGCGCAGCG AGACCCGTTC GGCCGATCGT
CCGCGCAGCC GCGACGCCGG CGAACGCGGT TTCGACCGGC CGCGCCGCGC CAACGAGGAC
GACACCAAGA TTTTCGCCAA GCGCCCGGCC TTCGGCGGCC GCGGCGCCTA TCGCGAGCGG
CCGAAGACCG AGCCGAAGAA GGAACGTCGC GCGCCGCCGG CGGCGAGAGC CGACGACAAG
ACCGGCGATC GCATCGCCAA GGTGGTCGCC CGCGCCGGCC TGTGTTCGCG CCGCGACGCC
GAGACCTGGG TCACCGAGGG CCGCGTCGCG GTCAACGGCC TGGTGATCGA CAGTCCGGCG
CTCGACGTGA TGCCCTCCGA CGTCATCACC GTCGACGGCA AGCCGTTGCC GGAGCGCGAG
CGCACGCGGC TGTTCCTGTA TCACAAGCCG CGCGGGCTGA TGACCACCCA TGCCGATCCC
GAGGGGCGGC CGACGGTGTT CGACAATCTG CCCGAAGACC TGCCGCGCCT GATCTCGATC
GGCCGGCTCG ACTTCAACAC CGAGGGCCTG CTGCTGCTGA CCAATGACGG CGGGCTGGCG
CGCGCGCTCG AACTGCCGGA GACCGGCTGG CTGCGGCGCT ACCGCGTCCG CGCCCATGGC
GAAGTCACCC AGGCGCAGCT CGACGAGTTG AAGAACGGCA TCGAGGTCGA CGGCGTCAAA
TACGGCGAGA TCGAAGCCAA GCTCGAACGC GACCAGGGCG CCAATGTCTG GCTGGTGTTC
GCGATCCGCG AAGGCAAGAA CCGCGAAGTC CGCAACGTGC TGGCGCATCT CGGCCTCGAG
GTGAACCGGC TGATCCGGGT CTCCTACGGC CCGTTCCAGT TGCTGGAGAT CGAGGAAGGC
GAGGTCGAGG AGGTCAAGAC GCGGGTGCTG CGCGAGCAGC TCGGCGACAA GATCATCCAG
CTCGCGGGCG CCGATTTCGG CGGGCCGTCG CCGAGCGAGG CGCGGCCGAA GCCGCGTCCG
GGCAGGCCCG TCGCTGCTGC CGAGGCGGCG CCGGCGCCGA AGAAGAAAGC CCCGACCAAG
CGCGGCGCGG TCGAGGACCG CAAGGGCCGC AAGGTCAAGG TCGAGCGCAC CGGCAGCGGC
GGCGACCGGG GCCTCACCCG CGGCCCCGCC CGGCGCTATC ACGGCAAGCG CGAACCGGCA
CCTCGCGAGG ACTAA
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| Protein sequence | MPRDTDKNNA SARGRRDRPG AGKGASGGKG ASGGKGGFGG KGAGGKGPGG GKSASGGKGR
SGAARGPEKK FAKRGEAYEP RGDKPFAKKA PGGDAKRSFG GEGKRPYVKR EGAAPRRDFE
ARPRRDDGDA PRPRFNRDER PARSGGDRPE RGPRKEFGDK RSFAPREGGD KRPYTPRADR
GDGARPAGRF GDKKFGDRKP YASREGGEKR PYTPREGGDK RPYTPREGGG EKRPYAARAG
GEKRSYAPRG DGEKRPYTPR AGGDKRPYAA RDGGGEKRAY AQRGDGEKRP YTPREGGDKR
PFKPREGGDR KFGRGAPDRG PRKEFGSRPD RGADRGESKP WQKRDGASAE RSERGPRSFD
KPRFDKPRED RGGDRPKFER RERSGDWHEH PRSETRSADR PRSRDAGERG FDRPRRANED
DTKIFAKRPA FGGRGAYRER PKTEPKKERR APPAARADDK TGDRIAKVVA RAGLCSRRDA
ETWVTEGRVA VNGLVIDSPA LDVMPSDVIT VDGKPLPERE RTRLFLYHKP RGLMTTHADP
EGRPTVFDNL PEDLPRLISI GRLDFNTEGL LLLTNDGGLA RALELPETGW LRRYRVRAHG
EVTQAQLDEL KNGIEVDGVK YGEIEAKLER DQGANVWLVF AIREGKNREV RNVLAHLGLE
VNRLIRVSYG PFQLLEIEEG EVEEVKTRVL REQLGDKIIQ LAGADFGGPS PSEARPKPRP
GRPVAAAEAA PAPKKKAPTK RGAVEDRKGR KVKVERTGSG GDRGLTRGPA RRYHGKREPA
PRED
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