| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_1008 |
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| Symbol | |
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| ID | 3909132 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 1154444 |
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| End bp | 1156507 |
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| Gene Length | 2064 bp |
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| Protein Length | 687 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637882901 |
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| Product | lipopolysaccharide biosynthesis |
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| Protein accession | YP_484629 |
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| Protein GI | 86748133 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3206] Uncharacterized protein involved in exopolysaccharide biosynthesis |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.597439 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGCCCA GGCCGTCTTC CCAAACGATC TCCGACGACC GCAATCCCGA CGGGATCGAT
TTCAGGAACG TCGCCGGCAT TCTGGCGCGG CGCAAGACCT GGGTGTTCGG CGTTCCGCTG
GCGCTGTGCG CGGTGGTCCT GGCCTATCTC CTGGTCGCGC AGCCGTCCTA CACCGGATGG
GCGCAGGTGT TCGTCGATCC GCGCGATCAG TACACGCCGA AGGACGACCC GCTGCAGAAT
TCGGTGCCGG GCGACGGCCT GCTGCTGGTC GAGAGCCAGC TCAAGATCAT CACCTCGAAC
GAGGTGCTGA ACCGCGTCAT CGAGCAGATG AATCTGCAGA ACGATCCGGA GTTCAACGGC
GAGCGGATGG GGCTCGGCCG GCTGGTGAAG GCGCTGATCG GGCTCGGCAA GACCGAGGAC
CGCGCCCTCG TCACGCTGCG CAATCTGCGC AAGAAGGTCG CCACCAAGCG GGTCGACCGC
TCCTTCGTGA TCGACATCAT GGCCTCGGCC GACACCGCGC CGCGCGCGGC CGCGCTCGCC
AATGCGGTGG CGACCGCCTA TCTCGACGAG CAGGCCGGCG CCAACGCCGC GTTTCAGCGC
CGAACCTCGG AAGCGATCTC GGCGCAGCTC GGCAAGCTGC GGCAGGAGGT CAAGCGCGGC
GAGGAAGCCG TCGCCGCCTA CAAGGCGGCC AACAATCTGG TCGGCGCGCG CAGCCGGATG
GTGAGCGAGC AGCAGCTCGA CGAAGCCAAC ACCCAGCTCA CCAACGCCAA GACCCGGCTG
GCCGATGCGC AGGCGCGGGT CCGGCTGATC GAAACCATCG AGCACGGCGA CGCCGGCCTC
GAGGCGGTGC CCGAGGCGAT GCAGTCGGCC GCGATCGTGC AGTTGCGCGG GCGGCTGGCC
GACGCGTCGC GCGAGGAGGC GCAACTCGCG CAGATCGACG GCCCCAATCA TCCGGCGCTG
CAGGGCGCGC GGGCGCAGGT GCGTGACGTT CAGGCCGCGA TCCAGCGCGA GCTGAAGACG
ATCGCGCGCT CGGTGCGCAA CACCTACGCC AGCGAACGCA CCAATGTGCA GACCCTGCAG
GCCAATTTCG ACGCTCTGAA GACGCAGTCG CAGGCCAACG AGAAACTGCT GGTGCCGCTG
CGCGAGCTGG AGCGCAAGGC GGAATCCAGC CGCATCGTCT ACGAGAACTT CCTCGCCAAG
GCGAAGACCG CCGAGGAGCG GCAGGGCATC GACACCACCA ACATCCGGCT GATCTCGCGC
GCCACCACGC CGGAAAACAA GAGCTGGCCG CCGACGCTGA TCATGCTGGC CGCCGCGATC
TTCGCCGGGC TGACCATCGG CATCGCGCTG GCGCTGGCGC GCGATCACTT CGAGCGCCCG
GACCGTGGAC CCGAGCCGGA GGCCGTCGAC GAAGTCGATC CTCCCGTCGC GGTCGCGGTC
GCGCCCGTCC CGGCGCCGCG GCCGGTGATG GCGCAGCCCC GCACCGGCCG GCTGAAGGCG
CTGAGCGCGG ACCTGCTCGC GGCGCCGAAG GGCCACACCA TCGTGCTGGT CCAGGTGCAA
CGCGCCGCGT GGCTCGACGA CGTCGCGCTG CAACTCGCGC GGACCGTGAT CGCCGCCGAG
ATGGACGTGA TGCTGGTCGA CGCCGATCTG GCGCGGCATC ACACCACGTC GCGGCTCGGC
TTCGACGGTG CGCCCGGCCT GCGTGACGTG ATGGCCGGAA CCGCCGCGAT CAACGAGGTC
GTGAAGTTGC ACCAGCCGAC CGCGATGCGG ATCGTGCCGG TCGGGCTGTC GGCCGTCGGC
AATCGCGATC CGCGCGCCCG GCAGGCGCTG CAGTCGGCGG TGCAGCAGCT GCGCGCGTTC
GACCGCGTCA TCGTCGACGG CGGCGAGATC GGATCGACCG CGTCCGAATT CGGGCTGTAC
TACATGGCCG ACGAAGTCGT GTTCCTGGCG CAGGGCCCCG GCGGCAAGAG CGAGGACGCC
GCCATCCTGG TCGATCTGCT GCAATTGCGT CAGGTCAAGG CGCGGATCGT GTTCGTCGAG
CCGGACGTCG CGGTGGCGGC ATGA
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| Protein sequence | MSPRPSSQTI SDDRNPDGID FRNVAGILAR RKTWVFGVPL ALCAVVLAYL LVAQPSYTGW
AQVFVDPRDQ YTPKDDPLQN SVPGDGLLLV ESQLKIITSN EVLNRVIEQM NLQNDPEFNG
ERMGLGRLVK ALIGLGKTED RALVTLRNLR KKVATKRVDR SFVIDIMASA DTAPRAAALA
NAVATAYLDE QAGANAAFQR RTSEAISAQL GKLRQEVKRG EEAVAAYKAA NNLVGARSRM
VSEQQLDEAN TQLTNAKTRL ADAQARVRLI ETIEHGDAGL EAVPEAMQSA AIVQLRGRLA
DASREEAQLA QIDGPNHPAL QGARAQVRDV QAAIQRELKT IARSVRNTYA SERTNVQTLQ
ANFDALKTQS QANEKLLVPL RELERKAESS RIVYENFLAK AKTAEERQGI DTTNIRLISR
ATTPENKSWP PTLIMLAAAI FAGLTIGIAL ALARDHFERP DRGPEPEAVD EVDPPVAVAV
APVPAPRPVM AQPRTGRLKA LSADLLAAPK GHTIVLVQVQ RAAWLDDVAL QLARTVIAAE
MDVMLVDADL ARHHTTSRLG FDGAPGLRDV MAGTAAINEV VKLHQPTAMR IVPVGLSAVG
NRDPRARQAL QSAVQQLRAF DRVIVDGGEI GSTASEFGLY YMADEVVFLA QGPGGKSEDA
AILVDLLQLR QVKARIVFVE PDVAVAA
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