| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_0998 |
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| Symbol | |
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| ID | 3909295 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | + |
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| Start bp | 1141411 |
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| End bp | 1143090 |
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| Gene Length | 1680 bp |
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| Protein Length | 559 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637882891 |
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| Product | thiamine pyrophosphate protein |
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| Protein accession | YP_484619 |
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| Protein GI | 86748123 |
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| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
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| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.79453 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.343483 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCATCACA TGCTCGAGAG CCGCACCGCC GCCGAGGCGC TGGTCGATCA ACTGGCGATC
AACGGCGTCA AGCACGTGTT CTGCGTGCCG GGAGAGAGCT TCCTGCCGGT GCTGGACGCG
CTGCGCGATC GCGACATCAC CATCACCGTC TGCCGCCATG AGGGCGGCGC GGCGATGATG
GCGGAGGCGA TCGGCAAGGC GACCGGCCAG CCCGGCGTCT GTTTCGTCAC CCGCGGGCCG
GGGGCGACCA ATGCGTCGGC GGGCATTCAC GTCGCGCGGC AGGACTCGAC GCCGATGATC
CTGTTCGTCG GCCAGGTCGA ACGCGCGGTC AAGGAGCGCG AGGCGTTTCA GGAGCTCGAC
TATCGCGCCG TGTTCGGCAG CATGACGAAA TGGACCACCG AGATCGACGA TGCCGATCGC
GTCACCGAGC TGGTGTCGCG CGCGTTCTAC ACCGCGACCA GCGGCCGGCC GGGGCCGGTG
GTGATCGCGC TGCCGAAGGA CGTGCTGAGC GAACGCGTCA CCGTCGGCCA TGCCCCGGCG
TTCAGACCGG TCGAAACCTC GCCCGGCGAC GAGGAGATGG ACGAACTCGC GGCGCTGCTC
GCCGGCGCCG AGCGACCGCT GATCGTGCTC GGCGGCAGCC GCTGGAGCCT GAAGGCGCGC
GAGCAGATCG AACAGATCGC GACTCGCACC GGGCTGCCGG TCGCGACCAG CTATCGCCGC
GGCACGCTGT TCGACGTGAT GCATCCGCGC TATGCGGGTG ATCTCGGCCT CGGACCCAAT
CCGAAGCTGG TGGCGCGCGC CAAGGCAGCC GATCTCGTGG TGCTGATCGG CGGACGGCTG
GGCGAAATTC CGTCGCAGGG CTACACCCTG CTCGACAGTC CCGCGCCGCA GACCAAGCTG
GTGCACATCC ATCCCGGCGC CGAGGAACTC GGCCGGGTGT ATCGTCCGCA ACTCGCGATC
CACGCCTCGC CGGCGCGCTT CGTCGCGGCG CTGGCGAAAC GCGACATCGT CGCGCGACCG
GAGTGGCGGG ACGCCGCCGA CGCGGCGCAT GCCGACTATC TCGCCTGGAC CGAGACCGCG
ACGCCGCAGC CCGGCGACGT CAATCTCGGC GAGGTGATGA TTTGGCTGCG CGACAACGTG
CCGGCCGACA CCATCCTGTG CAACGGCGCC GGCAACTACG CGTCGTGGAT TCACCGGTTC
TATCGTTTCC GTCACTACAT GACCCACATC GCGCCGACCT CGGCCTCGAT GGGCTACGGC
ATGCCGGCCG CGATCGCGAT GCAGCGGCTG CATCCGGAGC GGTTGGTGCT GTCGGTCAAT
GGCGACGGCG ATTTCCTGAT GAGCGGTCAG GAATTCGCCA TCGCCGTGCA GTATCGGCTG
CCGATCGTCG TGGTGGTCTG CGACAACGGC ATGTACGGCA CCATCCGGAT GCATCAGGAG
CGCGAGTTTC CGGGACGCGT CGCCGCCACC GAGCTGCACA ATCCGGATTT CGCCGCCTAT
GCGCGCGCCT TCGGCGGCTT CGGCGCCAAT GTCGAGAAGA CGGCCGACTT CCCGGCGGCG
TTCACCGCGG CGCGCGCCTC CGGCCTGCCG TCGATCATCC ATCTGAAGAT CGACCCCGAC
GCGATCCTCC CCGGCGCGAC GCTGTCCGGC ATCCGCGCGG CGGCGCTGGA AAAGGCGTAG
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| Protein sequence | MHHMLESRTA AEALVDQLAI NGVKHVFCVP GESFLPVLDA LRDRDITITV CRHEGGAAMM
AEAIGKATGQ PGVCFVTRGP GATNASAGIH VARQDSTPMI LFVGQVERAV KEREAFQELD
YRAVFGSMTK WTTEIDDADR VTELVSRAFY TATSGRPGPV VIALPKDVLS ERVTVGHAPA
FRPVETSPGD EEMDELAALL AGAERPLIVL GGSRWSLKAR EQIEQIATRT GLPVATSYRR
GTLFDVMHPR YAGDLGLGPN PKLVARAKAA DLVVLIGGRL GEIPSQGYTL LDSPAPQTKL
VHIHPGAEEL GRVYRPQLAI HASPARFVAA LAKRDIVARP EWRDAADAAH ADYLAWTETA
TPQPGDVNLG EVMIWLRDNV PADTILCNGA GNYASWIHRF YRFRHYMTHI APTSASMGYG
MPAAIAMQRL HPERLVLSVN GDGDFLMSGQ EFAIAVQYRL PIVVVVCDNG MYGTIRMHQE
REFPGRVAAT ELHNPDFAAY ARAFGGFGAN VEKTADFPAA FTAARASGLP SIIHLKIDPD
AILPGATLSG IRAAALEKA
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