| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_0880 |
|---|
| Symbol | |
|---|
| ID | 3909060 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 1007333 |
|---|
| End bp | 1008319 |
|---|
| Gene Length | 987 bp |
|---|
| Protein Length | 328 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637882773 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_484502 |
|---|
| Protein GI | 86748006 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3181] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.824369 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.406505 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCTGA TCAGCCGACA AAGCACCTTC CGCCTCGCCG CGCTCGCACT TTTGACCACG
CTGCTGCCGC TCCACGGCGC CGCGGCCGAA GGACTGTATC CCGCGCGCCC CGTCCGCATC
GTGGTGCCGT TCGCCGCCGG CGGCGTCGCC GACATCACCG CCCGGCTGGT CGCCGACAAG
CTCGGCGCCA AGCTCGGCAG CCGCTTCTAC ATCGAGAACC AGCCCGGCGC CGGCGGCATC
AGTGCGGCGC GCACCGTGAT CGCGGCGCAG CCCGACGGCT ACACGCTGGC GCTGCTGTCG
AACGGCACCG CGATCAGCGC CTCGCTGTTC AAGAAGCTGC CGTTCGATCC GGTCAAGGAC
TTCGCGCCGA TCTCGACTCT CGGCTTCTTC GACTTCCTGT TCACGGTCCG GGCCGATGCG
CCCTACAAGA CGATGGAAGA GTTCATCAAG GCGGGCAAGC AGAGCCCGGG CCGATTCAAT
GTCGGCACCA TCATTCTCGG CAGCACGCAG AATCTCGCGG CCGGCATGTT CAAGACCGCG
GCGGGGATCG ACTTCGTCAC GATTCCGCAT CGTGGCACGC CGGACGTCTT GGTGTCGCTG
CTGCAGGGCA ATCTCGACAT GGCGATCGAC AGCTACTCGG CGCTGAAGGG CAGCCTCGCC
GACGGCAAGA TCCGCACGCT GGCCGCCTCG GGGCCGCTGC GCTCCAAGAT CACGCCGAAC
GTGCCGACGC TGCGCGAAAA CGGACTGGAA GTGAGCATCG AATCCTGGAA CGCGCTGTTC
GCGCCGGCCG CGACGCCGCC GGCGGTGATC AGCACGCTGA ACCGCGCGCT GCAGGAGATC
CTCGCCGAAC CGGCGCTGAA GAAACAGCTG CTCGACCTCG GCGTCGACGC GCGCGGCTCG
ACGCCGGACC AGCTCGCGAC GCGACTGCGC GCCGACATCG AGAAATGGAA GGCCGTGATC
GAGACCTCCG GGATCGAGAA ACAATAG
|
|---|
| Protein sequence | MTLISRQSTF RLAALALLTT LLPLHGAAAE GLYPARPVRI VVPFAAGGVA DITARLVADK
LGAKLGSRFY IENQPGAGGI SAARTVIAAQ PDGYTLALLS NGTAISASLF KKLPFDPVKD
FAPISTLGFF DFLFTVRADA PYKTMEEFIK AGKQSPGRFN VGTIILGSTQ NLAAGMFKTA
AGIDFVTIPH RGTPDVLVSL LQGNLDMAID SYSALKGSLA DGKIRTLAAS GPLRSKITPN
VPTLRENGLE VSIESWNALF APAATPPAVI STLNRALQEI LAEPALKKQL LDLGVDARGS
TPDQLATRLR ADIEKWKAVI ETSGIEKQ
|
|---|
| |