| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_0802 |
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| Symbol | |
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| ID | 3909617 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 899531 |
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| End bp | 901312 |
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| Gene Length | 1782 bp |
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| Protein Length | 593 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637882695 |
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| Product | Type I secretion system ATPase, PrtD |
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| Protein accession | YP_484424 |
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| Protein GI | 86747928 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACAGCA TGAGCGTACC GACTTCATCC GAACAAGCGC CGCGCGATCT GCCGACCGCG
GCGATCGCGT CCTGCCGCAA CGCGTTTCTC GCGACCGGGC TGTTCTCCGC CGTGATCAAC
CTGCTGATGC TGGCCGGGCC GGTCTACATG CTGCAGGTGT ACGACCGGGT CATTCCGTCA
CGCAGCATTC CGACCCTGGT GGCGCTGTCG ATCGCGGTCG CGGCCTGCTA CGCGCTGCAG
GGCCTGTTCG ATTTCTTGCG CCAGCGCATT CTGACCCGGA TCGGCGCGGC GCTGCACGCC
GCCTTGTGGG AGCCGGTCGT CAGCCACATC CTGCGCTCGC CGCTGCGCGG CGGCGGCGCC
AACCGCGGCC TGCAATTGTC GCACGATCTC GATCAGGTGC GATCCTTCCT GTCCGGGCTG
GGCCCGACCA CGCTGTTCGA CCTGCCGTGG ATGCCGCTGT ATCTCGCGGC CTGCTTCCTG
CTGCATCCCT ATCTCGGCTG GACCCTGGTG GTGGGTGCCG TGCTGCTGTT CGGCATAGCG
CTCGCCACCG AATTCCTCAC CCGGGCGCCG ACGCGCGACG CCTCACGCAG CGGCGCGGCG
CGCAGCGTCC AGCTCGAGGC CGGGCGTCGC AACGCCGAGG TCGTCGCCGC GCTCGGCATG
GAGCAGCGGC TGATCGCGCG GATCGGCAGC GCCAACGACG ACCATCTCGA TGCGCAGCAG
CGCAATGCCG ACATTGCCGG CGCGCTCGGA TCGCTGTCGA AGAGCCTGCG CTTCATGCTG
CAATCCGCCC TGCTCGGGCT CGGCGCTTAT CTGGTGATCG AAGGCGAGGC CAGCAGCGGC
GTGATGATCG CGGCATCCAT CCTGGGCAGC CGCGCACTCG CCCCGGTCGA ATTGGCGATC
TCGATCTGGC GTCCGTTTCT CGGCGCGCGG CAATCCTGGC AGCGGCTGCG CAGCGCCCTG
ACGTCTGCGC CGGCGCAAGC CTCCGCGGTC GCGCCGGAGC GCGCGGTGCA GCAGCTTTCG
GTCGACCAGG TGTACGTCGC CGCCCCGGGC ACCACGACGG CCATCGTGCA GAACGCGACC
TTCAAGATCG AGTCCGGTCA GGCGGTCGGC ATCATCGGGC CCTCGGCGGC CGGCAAATCG
ACCCTGGCAC GCGCGCTGGT CGGGCTGTGG CCGGCGGCGC GCGGCGAGAT CCGGCTGGAC
GGCGCGACGC TGGATCAATG GCCGGCGGAG GTCCGCGGCG GCATGATCGG CTATCTGCCG
CAGGACGTCG AACTGTTCGA CGGCACGGTG GCCGAGAACA TCGCCCGGTT CGATCCCGAC
ATCGACGAAG CGGCGGTGAT CGCCGCCGCG AAGGCGGCCG GCGCCTATGA GCTGATCCTG
AAACTGCCGA AGGGCTTCGA GATGCGCATC GGCGAGGCCG GCGCCACCTT GTCCGGCGGC
CAGCGGCAGC GGATCGCGCT GGCGCGCGCA CTGTACGGCG ACCCGTTCAT GGTGGTTCTC
GACGAGCCCA ACGCCAGCCT CGACGCCGAA GGCGATGCGG CGCTGACCGA CGCGATCCGC
CGGGTCCGCG CGCGCGGCGG CATCGCCATC ATCATCGCCC ATCGCCCATC GGCGCTCGCC
GCGGTCGATC TGGTGCTGAC CCTCGCCAAC GGACAGGTGC AGGCGTTCGG CCCGAAGGAC
GAGGTGCTCC GCAAATCCCT GGCCGGCCAA TACAACGCGC CCGGCACTGT CGCCTTGCAG
GCGGTGCCGG AATCGCGCCC GCCGACCGCC GCCGTCAGCT GA
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| Protein sequence | MDSMSVPTSS EQAPRDLPTA AIASCRNAFL ATGLFSAVIN LLMLAGPVYM LQVYDRVIPS
RSIPTLVALS IAVAACYALQ GLFDFLRQRI LTRIGAALHA ALWEPVVSHI LRSPLRGGGA
NRGLQLSHDL DQVRSFLSGL GPTTLFDLPW MPLYLAACFL LHPYLGWTLV VGAVLLFGIA
LATEFLTRAP TRDASRSGAA RSVQLEAGRR NAEVVAALGM EQRLIARIGS ANDDHLDAQQ
RNADIAGALG SLSKSLRFML QSALLGLGAY LVIEGEASSG VMIAASILGS RALAPVELAI
SIWRPFLGAR QSWQRLRSAL TSAPAQASAV APERAVQQLS VDQVYVAAPG TTTAIVQNAT
FKIESGQAVG IIGPSAAGKS TLARALVGLW PAARGEIRLD GATLDQWPAE VRGGMIGYLP
QDVELFDGTV AENIARFDPD IDEAAVIAAA KAAGAYELIL KLPKGFEMRI GEAGATLSGG
QRQRIALARA LYGDPFMVVL DEPNASLDAE GDAALTDAIR RVRARGGIAI IIAHRPSALA
AVDLVLTLAN GQVQAFGPKD EVLRKSLAGQ YNAPGTVALQ AVPESRPPTA AVS
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