| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_0801 |
|---|
| Symbol | |
|---|
| ID | 3909616 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 898198 |
|---|
| End bp | 899520 |
|---|
| Gene Length | 1323 bp |
|---|
| Protein Length | 440 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637882694 |
|---|
| Product | Type I secretion membrane fusion protein, HlyD |
|---|
| Protein accession | YP_484423 |
|---|
| Protein GI | 86747927 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCCAAC CCGCCGTGAC AGAAGACCGC CGCAGCGCGC CGTTCCGCGA TGTCCGAAAC
GCCGTGATCA TCGGCGTGGC AGCGCTCGCG ATCGTGATCT CGACGGCTGG CGTCTGGGCC
GTGACGGCGC CGATCGCCAG CGCGGTGATC GCGCCGGCGC AGGTGGTGGT CGACAGCAAT
GTCCGCCGCA TCCAGCACCC GACCGGCGGC GTGGTCGCCG GCATCTCCGT CAACGACGGC
GACTACGTTC ACGCCGGCGA CGAACTGCTC CGGCTCGACG AAACCCTGCC GCGCGCCAAT
CTGGCGCTGA TCGAGAATCA GCTCAACCAG TTCTGGACAA GGCGGGCCCG GCTGCAGGCC
GAGCAGAACG GGCGCGACGC CATGCCGGTG CCGGTCGAAC TGACCGGCCG CACCGACGAG
CCGGCGATCG CGCAGATCAT CGAGGGCGAG ACCGCGCTGC TGCTGCGGCG GCGCGAAGCG
ATCACCGGCC AGCAATCGCA ATTGGGCGAA CGCAAATCCC AGATCGGCGA GGAAATCCGC
GGACTGGCCG CGCAGATCGA TTCGAAGCGC GAACAGATCC GTCTGATCCA GCGCGAGCTC
GAAGGCGTCC GGCAGTTGTT CGACAAGAAC CTGATCCCCT ATGCCCGCCT GACCGCGCTG
GAGCGCGAAG CCGCCCGCCT CACCGGCGAG GAAGGCCAGC TGATCGCCGA CACCGCACGG
GCGAAGGGGC GTATCACCGA GACCGAGCTG CAGATCATCC AGCTCACGCA GGATCAGCGC
CGCGAGGTCG CGACCGACCT GCGCGAGGTC GAGATCAAGA TCGCCGATCT GGCGGAACGC
CGGATCGCCG CGCAGGACCA GCTCACGCGC GTCGTCCTCC GCGCGCCGCA GGACGGCCTG
ATCCATCAGA AGGCGGTGCA CACCGTCGGC GGCGTCATCT CGCCCGGCGA ACAATTGATG
CTGATCGTGC CCAAGGATTC GTTGGTGATC GAGGCGCGGG TCGAGCCGCA GATGATCGAC
CGGCTGAAGC CCGGCCAGCC GGCCAAGCTG CGCTTCACCG CGTTCGACAC CGCGGTCACG
CCCGAACTCG ACGGCACGCT GACCCGCATC GCCGCCGACC TCACCAAGGA TCAGCAATCG
GGCGCCGCCT ATTATGTGGT CCGGATCAAT CTCGCCGAGC GCGAGCTGGC GCGGCTCGAA
GGCAAGGTCC TGGTGCCCGG CATGCCGGTC GAGGCCTACA TCCAGAACGG CGTGCGGACC
GCGTTGGCCT ATCTGAGGAA ACCGCTCGAG GATCAGCTCG CCCGCGCCTT CCGCCAGCGC
TGA
|
|---|
| Protein sequence | MTQPAVTEDR RSAPFRDVRN AVIIGVAALA IVISTAGVWA VTAPIASAVI APAQVVVDSN
VRRIQHPTGG VVAGISVNDG DYVHAGDELL RLDETLPRAN LALIENQLNQ FWTRRARLQA
EQNGRDAMPV PVELTGRTDE PAIAQIIEGE TALLLRRREA ITGQQSQLGE RKSQIGEEIR
GLAAQIDSKR EQIRLIQREL EGVRQLFDKN LIPYARLTAL EREAARLTGE EGQLIADTAR
AKGRITETEL QIIQLTQDQR REVATDLREV EIKIADLAER RIAAQDQLTR VVLRAPQDGL
IHQKAVHTVG GVISPGEQLM LIVPKDSLVI EARVEPQMID RLKPGQPAKL RFTAFDTAVT
PELDGTLTRI AADLTKDQQS GAAYYVVRIN LAERELARLE GKVLVPGMPV EAYIQNGVRT
ALAYLRKPLE DQLARAFRQR
|
|---|
| |