Gene RPB_0673 details

Gene Information

• Locus tag: RPB_0673
• Symbol: def
• ID: 3908600
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Rhodopseudomonas palustris HaA2
• Kingdom: Bacteria
• Replicon accession: NC_007778
• Strand: +
• Start bp: 757821
• End bp: 758348
• Gene Length: 528 bp
• Protein Length: 175 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 637882564
• Product: peptide deformylase
• Protein accession: YP_484295
• Protein GI: 86747799
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0242] N-formylmethionyl-tRNA deformylase
• TIGRFAM ID: [TIGR00079] peptide deformylase

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 0.478073
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 14
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGGCCCTGC GCGAAATCAT CATCCTGCCG GACAAGCGGC TGCGTGAAAT CTCCAAGCCC 
GTCGCCGAGG TGACGCCGGA GATCCGCAAG CTCGCGGACG ACATGTTCGA GAGCATGTAC 
GAGGCGCCCG GCATCGGGCT GGCGGCGATT CAGATCGCCG AGCCGGTGCG GCTGATCACG 
ATGGACATCG TGCGCAAAGA GGGCAACGGC AAGAGCGATC CGCGGGCCTT CATCAATCCG 
GAGATCGTCG GCGCCTCGGC CGAGCTGAAC GTCTACGAGG AAGGCTGCCT GTCGATCCCG 
GAATACTACG CCGAGGTCGA GCGGCCCAAG ACGGTGCGGA TTCGTTACAC CGATCTCGAC 
GGTCAGGTGA AGGAAGAGGA CGCCGACGGC CTGTTCGCGA CCTGCATCCA GCACGAGATC 
GACCACCTCA ACGGCGTGCT GTTCGTCGAT CATATCTCGA AGCTGAAAAA GGCGATGGTC 
GTCCGCAAGT TCGAGAAGGC CGCCAAGCGC GGCATCAAAT ACGTCTGA 

 

Protein sequence

MALREIIILP DKRLREISKP VAEVTPEIRK LADDMFESMY EAPGIGLAAI QIAEPVRLIT 
MDIVRKEGNG KSDPRAFINP EIVGASAELN VYEEGCLSIP EYYAEVERPK TVRIRYTDLD 
GQVKEEDADG LFATCIQHEI DHLNGVLFVD HISKLKKAMV VRKFEKAAKR GIKYV