| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_0643 |
|---|
| Symbol | |
|---|
| ID | 3908336 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | - |
|---|
| Start bp | 727983 |
|---|
| End bp | 729320 |
|---|
| Gene Length | 1338 bp |
|---|
| Protein Length | 445 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637882532 |
|---|
| Product | 3-phosphoshikimate 1-carboxyvinyltransferase |
|---|
| Protein accession | YP_484265 |
|---|
| Protein GI | 86747769 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0128] 5-enolpyruvylshikimate-3-phosphate synthase |
|---|
| TIGRFAM ID | [TIGR01356] 3-phosphoshikimate 1-carboxyvinyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 9 |
|---|
| Fosmid unclonability p-value | 0.128459 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAGCCATT CCGACCATAC CGCGCCGCTC GAAGCGCGCC TCAGCGCGGC GCTGAGCGGC
ACCGCCCGCG TCCCCGGCGA CAAGTCGATC TCCCACCGGG CGCTGATTCT CGGCGCGCTC
GCGGTCGGCG AGACCCGGAT TTCCGGCCTG CTCGAGGGCG AGGACGTGCT CAACACCGCC
CGGGCGATGC GGGCGCTGGG GGCGCAGGTC GAGCGCACCG GCGATTGCGC CTGGAGCGTC
CACGGCGTCG GCGTCGCGGG GTTCGCGCCG CCCGCGGCGC CGCTCGATTT CGGCAATTCC
GGCACCGGCT GCCGGCTGGC GATGGGCGCG GTGGCGGGCT CGCCGATCAT CGCCACCTTC
GACGGCGACG CCTCGCTGCG CTCGCGGCCG ATGCGCCGGA TCGTCGATCC GCTGGAGCAG
ATGGGCGCCC GGGTGACGCA GAGCGCCGAC GGCGGCCGGC TGCCGCTGAC GCTGCAGGGC
GCGCGCGACC CGCTGCCGAT CACCTACCGC ACCCCCGTAC CTTCGGCGCA GATCAAATCC
GCGGTGCTGC TCGCCGGCCT GTCGGCGCCG GGCGTCACCA CCGTGATCGA GGCCGAGGCC
AGCCGCGACC ATACCGAGCT GATGCTGCAG CATTTCGGCG CCACGGTCGT GACCGAGCCG
GAAGGCCCCC ATGGCCGGAA GATTTCGCTG ACCGGGCAGC CCGAGCTGCG CGGCGCGCCG
GTGGTGGTGC CGGCGGACCC GTCCTCGGCG GCGTTCCCGA TGGTCGCGGC GCTGATCGTG
CCGGGCTCCG ACGTGGTGCT GACCGAGGTG ATGACCAACC CGCTGCGCAC CGGCCTGATC
ACCACGCTGC GCGAGATGGG CGGCCTGATC GAGGAGAGCG AAACCCGCGG CGACGCCGGC
GAGCCGATGG CGCGCTTCCG CATCCGCGGC TCGCAATTGC GCGGCGTCGA AGTGCCGCCG
GAGCGCGCTC CGTCGATGAT CGACGAATAT CTGGTGCTGG CGGTCGCGGC CGCCTTCGCC
GAGGGCACCA CGATCATGCG CGGCCTGCAC GAGCTGCGGG TCAAGGAAAG CGACCGGCTG
GAAGCGACCG CGGCGATGCT GCGGGTCAAT GGCGTGACGG TCGAGATCTC GGGCGACGAT
CTGATCGTCG AGGGCAAAGG CCACGTCCCG GGCGGCGGGC TGGTCGCCAC CCACATGGAT
CACCGCATCG CGATGTCGGC GCTGGTGATG GGGCTGGCCG CCGACAAGCC GGTCAGGGTC
GACGACACCG CCTTCATCGC CACCAGCTTC CCGGATTTCG TCCCGATGAT GCAAAGGCTC
GGCGCCGAAT TCGGCTGA
|
|---|
| Protein sequence | MSHSDHTAPL EARLSAALSG TARVPGDKSI SHRALILGAL AVGETRISGL LEGEDVLNTA
RAMRALGAQV ERTGDCAWSV HGVGVAGFAP PAAPLDFGNS GTGCRLAMGA VAGSPIIATF
DGDASLRSRP MRRIVDPLEQ MGARVTQSAD GGRLPLTLQG ARDPLPITYR TPVPSAQIKS
AVLLAGLSAP GVTTVIEAEA SRDHTELMLQ HFGATVVTEP EGPHGRKISL TGQPELRGAP
VVVPADPSSA AFPMVAALIV PGSDVVLTEV MTNPLRTGLI TTLREMGGLI EESETRGDAG
EPMARFRIRG SQLRGVEVPP ERAPSMIDEY LVLAVAAAFA EGTTIMRGLH ELRVKESDRL
EATAAMLRVN GVTVEISGDD LIVEGKGHVP GGGLVATHMD HRIAMSALVM GLAADKPVRV
DDTAFIATSF PDFVPMMQRL GAEFG
|
|---|
| |