Gene RPB_0540 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_0540 
Symbol 
ID3909579 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp604962 
End bp605588 
Gene Length627 bp 
Protein Length208 aa 
Translation table11 
GC content72% 
IMG OID637882428 
Producthypothetical protein 
Protein accessionYP_484162 
Protein GI86747666 
COG category[S] Function unknown 
COG ID[COG0586] Uncharacterized membrane-associated protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.33721 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAACGCCG TTCTCGATGC CCTGATCGCC TTCGCCTCCG CCCATCGCGA GCTGGCCTAT 
CTGACGCTGT TCACGGCCGC GCTGCTGGAG GCGGTGCCGG TGCTGGGCAC ATTGGTGCCG
GGCTCGACCA TCATCCTGGC GCTGAGCGCG CTGATTCCGG GCGGCCAGCT CGATCTGGTC
GGCGTGCTCG CGGCGGCGGC GGCCGGGGCC GCGCTCGGCG ACGGCGCCGC CTACTGGATC
GGACATCGCC AGCAGCGGCG CATCCTGTCG GCATGGCCGA TGGCGCGCTA TCCCGAGCTG
GTGGCGCGCG CCGAGGCGTT CTTCGTGAGA TTCGGCGGCT GGGCGGTGTT GTTCGCCCGC
TTCGTGCCGC CGATTCGCGC CTTCGTGCCG ATCACCGCCG GCGCGCTGCA GATGCCGCCG
GCGCGGTTCT TCGCGATCAA CATCCCGGCG ATCCTGCTTT GGGCGCCGGC GCATGTGTTG
CCCGGCGTCG TCGCCGCCAC CGCGCTGGAG CAGGCGCACG GCCGATGGCA TCACTGGCTG
CCGGTGGTCG CGGGCGTGGC CGGCGTGGTC GTTCTAGCTG GCTGGCTGCT GTGGCGGCGA
CGGCGGGGTA AGGCGCAGGC GACCTGA
 
Protein sequence
MNAVLDALIA FASAHRELAY LTLFTAALLE AVPVLGTLVP GSTIILALSA LIPGGQLDLV 
GVLAAAAAGA ALGDGAAYWI GHRQQRRILS AWPMARYPEL VARAEAFFVR FGGWAVLFAR
FVPPIRAFVP ITAGALQMPP ARFFAINIPA ILLWAPAHVL PGVVAATALE QAHGRWHHWL
PVVAGVAGVV VLAGWLLWRR RRGKAQAT