| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_0527 |
|---|
| Symbol | |
|---|
| ID | 3909431 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Rhodopseudomonas palustris HaA2 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007778 |
|---|
| Strand | + |
|---|
| Start bp | 588299 |
|---|
| End bp | 589192 |
|---|
| Gene Length | 894 bp |
|---|
| Protein Length | 297 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637882415 |
|---|
| Product | LysR family transcriptional regulator |
|---|
| Protein accession | YP_484149 |
|---|
| Protein GI | 86747653 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0443839 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATGCCA AGCCGGATCT CTCCGACCTC ACAGCTTTCG CTGCGATCGC GGCTCATCGC
AGTTTTCGCA AGGCTGCCAA TGACTTGGGG GTGTCCGCCT CGACCCTGAG CCACATCATG
CGAACCCTGG AGGCCAATCT CGGAGTGAGA CTGCTGCACC GGACCACCCG CAGCGTTGCG
CCGACCGAGA TCGGCGAACG GCTGCTCGGC CGGCTCAATC CGGTGCTGCG CGATTTCGAC
GCCGCCTTGC AGGACCTCGA GGCGTGGCGC AGCCGGCCGA GCGGCACGTT GCGCATCAAT
GCCGCCGAGG GCGCGGTACG GTTGTTGCTG CAAACCGTGG TGCCGGCGTT TTTTGCGCGC
CACCCCGAGA TGGCGCTCGA TCTCGTCACC GAGGCGCGGC TGGTCGATAT CGTCGCGGAA
GGCTTCGACG CAGGCATCCG GATCGGCGAG GCGGTGCCGC GCGATATGGT CGCGGTGCGG
TTCGGCGGCG CGATCCGGTT CGTCGCGGTC GCGTCGCCCG GCTATCTCGC CGCGCACCCG
CCGCCGCGGA CCCCGGATGA CCTCGTCCAT CACGCCTGCA TCCGGTTCCG GTTGAAGAGC
GGGCAGTTGT TCCGCTGGGA ATTCGCGCGT CACGGCCAGG AATTGGCGGT CGATGTCGCC
GGTCCGTTGA CGCTCGACCA TGTCGAACTG ATGGTCGAGG CCGCTGCCGA CGGCCTCGGC
ATCGCCTATG TGCCGGACCG GACCGCGCAG CCTTATCTCT CGCGCGGCGC CGTGGTCGGC
GTGCTCGATG AGTGGTGTCC GAAAATCCCG GGGCTGTTCC TGTATTACCC CGGCCATCGC
CACGTCCCCG CTGGTCTTCG CGCCTTCATC GACGTTCTGC GGCACCTGCA CTGA
|
|---|
| Protein sequence | MNAKPDLSDL TAFAAIAAHR SFRKAANDLG VSASTLSHIM RTLEANLGVR LLHRTTRSVA
PTEIGERLLG RLNPVLRDFD AALQDLEAWR SRPSGTLRIN AAEGAVRLLL QTVVPAFFAR
HPEMALDLVT EARLVDIVAE GFDAGIRIGE AVPRDMVAVR FGGAIRFVAV ASPGYLAAHP
PPRTPDDLVH HACIRFRLKS GQLFRWEFAR HGQELAVDVA GPLTLDHVEL MVEAAADGLG
IAYVPDRTAQ PYLSRGAVVG VLDEWCPKIP GLFLYYPGHR HVPAGLRAFI DVLRHLH
|
|---|
| |