| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_0518 |
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| Symbol | |
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| ID | 3909422 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 578210 |
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| End bp | 579949 |
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| Gene Length | 1740 bp |
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| Protein Length | 579 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637882406 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_484140 |
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| Protein GI | 86747644 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.311521 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGCAACGT TCGCAACGTT TTGTGGCGGC ATGGGATCCG TGCATTCGAT CACACACATT
GGAACGGCGC TTGCCGAAAC AAGCCGGCGC AGGCCGTTGC GGGCGGTGCC GCCGAAGCAG
GCGGCTGAGC TGGCGATGTC CGCCTTCGCG GCGATCGATT CGGCGCTGGC GATGATCGCA
CCCGACGGCC GGATCATGAT GGCCAATCCG GCCTTCGGTC GGCTGTTCGG CGATATTTCG
TCGGAAGATC TGCAGGCGCG CCTGCTGATC GAGTCCTGGC GCAATCTGGA AGGCGGCGAA
CGCGTCGTGC TGTTTCCGGA CGGCCGCAGC TTCCTGATCC GCACCAACAT ATTGCCCTCG
GGCTATTTCG TTTGCGCCAG CGACATCACC GATCAGCTCG CCCGGGATGC ACGCGATGCG
CGGCTGGTGC GAACCGACCG GCTGACCGAA CTCGGCAACC GCCGATTGCT GCGCGAGCGG
CTGCAGGATC TGCTCGACAG CTCGCCCGCG GTCCGCGGCG ACTGCGCCCT GCTGACCGTC
GACCTCGACC GTTTCAGGGC GGTCAACGAC GCCCTCGGCC GCAACATCGG CGACGCCCTG
CTCTGTCTGG TGTCGAAGCG GATCCGCTCC GCGGTGTCCG ACGTCGACAT CGTCACGCGG
CTGTATGGCG ATCAGTTCGG CATCATTCAG TTCGGACGGG CGCAACCCGA CTCCGCCGTC
ATCCTGGCCA AGCGGCTGTG CGATTTGCTG AGCCGCCCCT ACATGCTGGA AGGTCAGCTG
ATCGACGTCA CCGCCCGGGT CGGCATCGCG CCGCTCGCTT TGGAGGCGGC CGATGTCGAC
CAGGTCATGA AGAACGCCGA CCTGGCGCTG AACCGGGCCC GGCAGGACCG CGCGACCGGC
TATTGCGTGT TCGAATCCGG CATGGACGAG ACCGTGAAGG CCCGCCGCGC GCTCGAGACC
GATCTGCGCA GGGCGCTGGC GCTGCGCGAA TTCGCGCTGG TCTATCAGCC GCAATTCGAC
CTGCAGACCC GCCGCGTCAC CGGCTTCGAA GCGCTGCTTC GGTGGAATTC GCCGACCCGC
GGGACCGTGT CGCCGCTCGA CTTCATTCCG CTCGCCGAAG AGACCGGCAT CATCAATCCG
ATCGGCGAAT GGGTGCTGCG GACCGCCTGC CGCGACGCCG CCAATTGGCC CGCCGACATC
ACCGTCGCGG TCAACATTTC GGCCGTGCAA TTCGCTCACC GCACGCTCGC CACCACCGTG
CTGTCGGCGC TGTCGGACAG CGATCTCGAT CCGCGGCGGC TGGAGCTCGA GATCACCGAA
AGCGTGATGC TCGACGCGCG CGGCACCGCG CTCGGCGTCC TGCAGCGCCT CCGCGGCACC
GGCATCCGCG TCTCGCTCGA CGATTTCGGC ACCGGCTACT CGTCGCTGGG CTATCTGCGC
AGCTTCCCAT TCGACAAGAT CAAGATCGAT CAGAGCTTCG TCCGCGGCAC CGCCGAGGAC
CCCGGCAACC GCGCGATCGT GCGCGCGATC GCATCGCTCG GCCAGAACCT CGGCATGGCC
ACGGTCGCCG AAGGCGTCGA GACCGCCGAG CATCTGGAGC GCGTCGCCGC CGACGGCTGC
ACCCATGTGC AGGGCTATCT GATCAGCCGG CCGATTTCGC CCGAACAGGT CGACGGCTTC
CTCGCCGCCA AGAGCGCCGA AGAAACCGAA TGCCGTGACG ATCCGTTTCA GGTCGCCTGA
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| Protein sequence | MATFATFCGG MGSVHSITHI GTALAETSRR RPLRAVPPKQ AAELAMSAFA AIDSALAMIA
PDGRIMMANP AFGRLFGDIS SEDLQARLLI ESWRNLEGGE RVVLFPDGRS FLIRTNILPS
GYFVCASDIT DQLARDARDA RLVRTDRLTE LGNRRLLRER LQDLLDSSPA VRGDCALLTV
DLDRFRAVND ALGRNIGDAL LCLVSKRIRS AVSDVDIVTR LYGDQFGIIQ FGRAQPDSAV
ILAKRLCDLL SRPYMLEGQL IDVTARVGIA PLALEAADVD QVMKNADLAL NRARQDRATG
YCVFESGMDE TVKARRALET DLRRALALRE FALVYQPQFD LQTRRVTGFE ALLRWNSPTR
GTVSPLDFIP LAEETGIINP IGEWVLRTAC RDAANWPADI TVAVNISAVQ FAHRTLATTV
LSALSDSDLD PRRLELEITE SVMLDARGTA LGVLQRLRGT GIRVSLDDFG TGYSSLGYLR
SFPFDKIKID QSFVRGTAED PGNRAIVRAI ASLGQNLGMA TVAEGVETAE HLERVAADGC
THVQGYLISR PISPEQVDGF LAAKSAEETE CRDDPFQVA
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