Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RPB_0454 |
Symbol | |
ID | 3909799 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Rhodopseudomonas palustris HaA2 |
Kingdom | Bacteria |
Replicon accession | NC_007778 |
Strand | + |
Start bp | 500831 |
End bp | 501805 |
Gene Length | 975 bp |
Protein Length | 324 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 637882341 |
Product | pseudouridine synthase RluD |
Protein accession | YP_484076 |
Protein GI | 86747580 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 18 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 10 |
Fosmid unclonability p-value | 0.256268 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGGTCGTCG CCGGCGACGA GGGCTCATCG CGCCTCGACC GGGTGCTGGC CACGCGCTGC CCCGCATTGT CGCGGTCGCG GCTGAAGGTC CTGATCCTGG ACGGCCGCGT CGCGATCGCC GGCAGCGCGG TGCGCGACCC CGCTTATCAT GCGAGCCCGG GCGAGACGAT CACAATCGAC GTGCCGCCCC CGGTGGCGCC GGAGCCGGAA GGCGAGGCGA TCGCGCTGGA GATTGTGCAC GAGGACGACG ACATCATCGT CATCAACAAG CCCCGCGGCC TGGTGGTGCA TCCCGCCGCC GGTCACGAGA CCGGAACCCT GGTCAACGCT TTGATCGCGC ATTGCGGCGA ATCACTGTCC GGCATCGGCG GGGTGCGGCG GCCGGGGATC GTGCACCGGC TCGACAAGGA CACCACCGGG CTGATGGTGG CGGCAAAGAA TGATCGGGCG CATCAATCCT TGAGCGCGCA ATTCGCCGAT CACGGCCGCA CCGGCGAGCT GCGCCGCGGC TATTACGCCT TCGTCTGGGG CGTGCCGAAC CGCGCCCGCG GCACCATCGA GGCGCCGATC GACCGCCATC CCTATGCCCG CGAGAAGATG GCGGTGCGCG ACGGCGGCCG CGAGGCGATC ACCCATTGGG AGGTGCTGGA AACCTTCACC GGGCGCAGCG GCGGCGAGAT CGTGTCGCTG ATCGCCTGCC AGCTGGAGAC CGGCCGCACC CACCAGATTC GCGTGCATCT GGCCCATCTC GGCCACCCGC TGCTCGGCGA CGACGTCTAC GGACCGCACT TCAAAACCAA GGCCAGCCAG CTCAGCCCGG CCGCCCGCGC CGCGCTGGCG GATCTCGGCC GTCAGGCATT GCATGCCTAT CTGCTGGTAT TAGAGCACCC GTCGTCGGGA GAGGTCATGG CCTGGGAATC CGGCCTGCCG GCCGATCTGG CGCGCCTGAA AGCCGCGCTT TCGGCGACGG AATGA
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Protein sequence | MVVAGDEGSS RLDRVLATRC PALSRSRLKV LILDGRVAIA GSAVRDPAYH ASPGETITID VPPPVAPEPE GEAIALEIVH EDDDIIVINK PRGLVVHPAA GHETGTLVNA LIAHCGESLS GIGGVRRPGI VHRLDKDTTG LMVAAKNDRA HQSLSAQFAD HGRTGELRRG YYAFVWGVPN RARGTIEAPI DRHPYAREKM AVRDGGREAI THWEVLETFT GRSGGEIVSL IACQLETGRT HQIRVHLAHL GHPLLGDDVY GPHFKTKASQ LSPAARAALA DLGRQALHAY LLVLEHPSSG EVMAWESGLP ADLARLKAAL SATE
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