Gene RPB_0439 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_0439 
Symbol 
ID3909995 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp482003 
End bp482767 
Gene Length765 bp 
Protein Length254 aa 
Translation table11 
GC content66% 
IMG OID637882325 
Productendonuclease III 
Protein accessionYP_484061 
Protein GI86747565 
COG category[L] Replication, recombination and repair 
COG ID[COG0177] Predicted EndoIII-related endonuclease 
TIGRFAM ID[TIGR01083] endonuclease III 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.45571 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.92859 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGAAAA TCACCCGCCG CGTGGCCGCT CCCGCCGCCC CGAGAACCGC CAAGACTACC 
CCGAAAAGCC TTGCGGCAAA CCCGGGGCAA ACCGGAGGCA AACCTGCGAA GCCGCCAAAA
CGCCCCCGCC GCTGGACTCC AGACGAGGTT CGCGAGGCTT TCACCCGCTT CGCCCGCGCC
AACCCGGAGC CGAAGGGTGA GCTCGAACAT CTCAACCCGT TCACCCTGCT GGTCGCGGTC
GTGTTGTCGG CGCAGGCGAC CGATGCCGGC GTCAACAAGG CGACTCGGAG TTTGTTCGCG
ATCGCCGATA CGCCGGCCAA GATGCTGGCG CTCGGCGAGG AGCGGGTGCG GGAGCATATC
AAGACCATCG GCCTGTTTCG CACCAAGGCG AAAAACGTGA TTGCGCTGTC GCAAAAACTG
CTCTCCGACT TTGGTGGGCA AGTCCCAAGC ACGCGCGCCG AGCTGGAGAC GTTGCCGGGG
GCGGGCCGCA AGACCGCCAA TGTGGTGCTC AACATGGCGT TCGGTCAGCC CACCATGGCG
GTCGATACCC ATGTGTTTCG CGTCGGCAAC CGCACCGGGC TCGCGCCCGG CGACACGCCG
CTCGCGGTCG AACTCGGGCT CGAGAAGGCG ATCCCGCCGG AGTTCATGCA GCACGCGCAC
CATTGGCTGA TCCTGCACGG CCGCTACACC TGCCTGGCCC GCAAGCCGCG CTGCGAGGTC
TGCCTGATCG TCGATCTGTG CAGGTGGCCG GAGAAAAGTG TGTAG
 
Protein sequence
MSKITRRVAA PAAPRTAKTT PKSLAANPGQ TGGKPAKPPK RPRRWTPDEV REAFTRFARA 
NPEPKGELEH LNPFTLLVAV VLSAQATDAG VNKATRSLFA IADTPAKMLA LGEERVREHI
KTIGLFRTKA KNVIALSQKL LSDFGGQVPS TRAELETLPG AGRKTANVVL NMAFGQPTMA
VDTHVFRVGN RTGLAPGDTP LAVELGLEKA IPPEFMQHAH HWLILHGRYT CLARKPRCEV
CLIVDLCRWP EKSV