Gene RPB_0400 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRPB_0400 
Symbol 
ID3908838 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRhodopseudomonas palustris HaA2 
KingdomBacteria 
Replicon accessionNC_007778 
Strand
Start bp444674 
End bp445381 
Gene Length708 bp 
Protein Length235 aa 
Translation table11 
GC content64% 
IMG OID637882286 
Productimport inner membrane translocase, subunit Tim44 
Protein accessionYP_484022 
Protein GI86747526 
COG category[S] Function unknown 
COG ID[COG4395] Uncharacterized protein conserved in bacteria 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.363906 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGGATATCT ACACCATCAT CTTCCTTGCG CTTGCGGTGT TCATCTTCCT GCGTCTGCGC 
AACGTCTTGG GGCAGCGGAC CGGCAGCGAG CGTCCGCCGT TCGACCGCGC CGCGGCGCGG
GACATGATCC CGGGCAAGCA GGACACCAAT GTCGTGTCGA TGCCGGGCTC GGTGATCGAC
CAGTCCCCGA TTGCTCCGAG CGCCGACGTC GTTCCGCCGT CGGATCGCTG GAAGGGCATC
GCCGAGCCGG ATTCGCCGCT GGAGCACGGC CTCAATGCGG TGTTCACCCA GGATTCGTCG
TTCGACGCCA ACCATTTCCT CTCGGGCGCC AAGGGCGCTT ACGAGATGAT CGTGATGGCG
TTCGCCAATG GCGACCGCCG CGCGCTGAAG GACCTGCTGT CGAGCGAAGT CTATGAGAGC
TTCGAGGCGG CGATCAAGGA TCGCGAGAAG AACGAACTGA AGACCGAGAC ACGCTTCGTC
GCGATCGAGA AGGCCGAACT GCTCGGCGCC GAAGTGCGCG ACCACGTCGC CCAGCTCACC
GTGAAGTTCG TGTCGCAGAT GATCTCGGTC ACCCGCGACA AGGCCGGCGC TGTCGTCGAT
GGCAGCCCCG ACAAGGTCGC CGATATCACC GACGTTTGGA CCTTCGCCCG CGATATCAGC
TCGCGCGATC CGAACTGGAA GCTGGTTGGC ACCGGAAACG AGCTCTAG
 
Protein sequence
MDIYTIIFLA LAVFIFLRLR NVLGQRTGSE RPPFDRAAAR DMIPGKQDTN VVSMPGSVID 
QSPIAPSADV VPPSDRWKGI AEPDSPLEHG LNAVFTQDSS FDANHFLSGA KGAYEMIVMA
FANGDRRALK DLLSSEVYES FEAAIKDREK NELKTETRFV AIEKAELLGA EVRDHVAQLT
VKFVSQMISV TRDKAGAVVD GSPDKVADIT DVWTFARDIS SRDPNWKLVG TGNEL