| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RPB_0392 |
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| Symbol | trmE |
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| ID | 3908830 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Rhodopseudomonas palustris HaA2 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007778 |
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| Strand | - |
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| Start bp | 436875 |
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| End bp | 438257 |
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| Gene Length | 1383 bp |
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| Protein Length | 460 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637882278 |
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| Product | tRNA modification GTPase TrmE |
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| Protein accession | YP_484014 |
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| Protein GI | 86747518 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0486] Predicted GTPase |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.379406 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGCATCCGA ACGACCAGAC CATCTTCGCC CTCGCGTCCG GCCGGCTGCC GTCGGCGCTG
GCGATCGTGC GGGTGTCGGG CGCGCGCGCC AGGGACGTGC TGGCCGCGCT GACGGGGGCA
TTGCCGCCGC CGCGGACTGT GCGGCGGGTT CGGATTCGCG ATGTAAATCA TGAGCTTATC
GACGACGCCG TGGTGCTGTG GTTCGCCGCG CCGGCGAGCG CGACCGGCGA GGATGTGGCC
GAGTTTCACA TCCATGGCGG CCGCGCGGTG CTGGCCGCGT TGGTCAAGGC TTTGGCTTCC
TTCGACGATG TGCGGCCGGC GGAGCCGGGC GAGTTCACGC GGCGCGCATT CGAGAACGGC
AAGCTCGATC TCACCGAAGC CGAAGGGCTC GACGATCTGA TTCACGCCGA CACCGAGGCG
CAGCGACGGC TCGCGGTGCG GCAGCTCGGC GGTCTGCTCG GCGACAGGGC GCGGCGATGG
CGGGCGCAGA TCATCGAGGC GCTGGCACTG ATCGAGGCCG GGATCGATTT CGCCGACGAA
GGCGACGTGC AGGGCGAGCT GATGGCGCCG GCGCTGCGGA CGATCGCGAC GCTGCACGGC
GAGATTGCAG AAGTGCTTGC GGCACAGGGC AAAAGCGAAC GGCTGCGGGA CGGGCTGGTG
GTCGCGATCG CGGGGCCGCC GAATGTCGGC AAATCGACGC TGATCAATCG TCTGGCGCGC
CGCGAGGTCG CGATCGTGTC GCCGCATGCC GGCACGACGC GTGATGTGAT CGAGGTGCAG
CTCGATCTCG GCGGTTATCC GGTGACGTTG ATCGACACTG CGGGGATTCG TGAGAGCGAG
GATTCGGTCG AGCAGGAGGG CGTGCGCCGG GCGAAGGCGC GAGCCGCGGA GGCGGACCTG
GTGTTGTGGC TCGGCGCGGA TGAGGCGATC GACGTAGCGG TCGAGGGCTC GGCGCCAGTC
TGGCGGGTGC GGAACAAGAT CGATTTGGTG CCGCAGGCCG ATACCGTTGG AGCCGATTCT
GGCGGCGCGG GTCTTGCGGC AAACCTGTGG CAAACCGAAG GCAACGTTGC CGCAAGGGAA
GCGTTTGGGA TTTCGGCGAA GCGGGGCGAT GGCGTCGGCG ATATGGTCGA GGCGCTGGCG
GGATTCGCTG CGCAGTATTT TGCGGCGAGC GGGGAGGCCG CGGTGATCAG CCGGGAGCGG
CATCGGCTTT TGCTGCAACA GGCCGAGGTC ATGCTGCGGT GCAGCATGAC TGTGGGCTTG
GCACCGGAGT TGGTTGCGGA GGAACTCAGG CTGGCTGCGG GAGCGCTGGG GCGGCTGCTC
GGCCGGGTCG ATGTCGAAGA CGTGCTCGGC GAGATCTTTG GCCGGTTCTG CATCGGCAAG
TGA
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| Protein sequence | MHPNDQTIFA LASGRLPSAL AIVRVSGARA RDVLAALTGA LPPPRTVRRV RIRDVNHELI
DDAVVLWFAA PASATGEDVA EFHIHGGRAV LAALVKALAS FDDVRPAEPG EFTRRAFENG
KLDLTEAEGL DDLIHADTEA QRRLAVRQLG GLLGDRARRW RAQIIEALAL IEAGIDFADE
GDVQGELMAP ALRTIATLHG EIAEVLAAQG KSERLRDGLV VAIAGPPNVG KSTLINRLAR
REVAIVSPHA GTTRDVIEVQ LDLGGYPVTL IDTAGIRESE DSVEQEGVRR AKARAAEADL
VLWLGADEAI DVAVEGSAPV WRVRNKIDLV PQADTVGADS GGAGLAANLW QTEGNVAARE
AFGISAKRGD GVGDMVEALA GFAAQYFAAS GEAAVISRER HRLLLQQAEV MLRCSMTVGL
APELVAEELR LAAGALGRLL GRVDVEDVLG EIFGRFCIGK
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